Gene detail

Detailed information of RMX55551.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1030:1063855...1074643
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00001745

ATGAGTCAAACAAAGAAACAGCACTCTGCCATGGTACATTTCGTCGCTGGTGGTTTAGGCGGCTCGTTTGGTGCCTTCGTAACATGTCCTCTCGAGGTGATTCAGACGAGACTTCAATCTTCTGCGTTTCGGCTTCAACGAACAGCAAATCTACGCGTTTCTCGCAATATTTCGTCCAGTGGCCAAGCCGCAAATTTAAGTACAGCTAGTGTGGCTAACTCGAAGCTTAATGTTGCGGCGAATCGCTTCAAAGGAGTATTTTCTTATGGAAGGTACATGGTTCAGCACGAAGGGTTCTTTTCGTTGTACAAAGGATTGGGGCCCACATTACTCGGTGTCACCCCATCAAGAGCAATTTATTTTGCCCTCTATTCCACAACAAAGGAGATACTGAACAAATCTGGCAAGCTAGTTGCCGATTCTTCACTTGTTTATATGACATCCGCGGCTATAGCTTCGTTTGTAAATCACACGGTTACAAATCCTTTGTGGTTCGTCAAAACGCGACTACAGTTGGACAACAGGGAAGCGCGGAGAGTAAATGCTTTCCATATAGTAAGAGATGCTTACAAGAGCGAAGGAATCAGAGCTTTTTACCGAGGACTTTCAGCTTCCTACGTAGGAATCTCAGAAACAGTAGTGCATTTTACGATCTACGAGAAAGTGAAAGCGAGATTGCTAAAGTTTCAACAGAAGACGCAAAGAGACCTGAATGTGATCGAGTGCATGCTGTCAGCCGGCGTTTCCAAATCCATCGCTGCAACTCTTTGCTATCCTCACGAAGTTGCACGAACTCGGCTACGTCAACAAGAAAGTGATTTCCTCGGAAAACAAAAATACAATTCGTTTCTTCAAACGCTGAAAACAGTTGTGAAAGAGGAAGGATGGAGAGGTCTCTATGGAGGTTTAGGAACCCACTTAATTCGACAAGTTCCAAATACAGTGATAATGTTTTTCACTTACGAAGGAGTCGTGTACCTTTTGGAGATTAGTTACCTAAATACTCGGGGTGAGAAGAAAACGAACCTTTTTCACTGCGAGATCCATCCAGATATGAGTAAAGGAAGATCCCCGTACGTCCATTTAGTGGCTGGAGGTATTGGAGGCACCGTCGGTGCTACATTGACGTGTCCTCTGGAGGTCGTAAAGACGAGATTGCAGTCCTCAGTTCCAACTTTTAGACATGTTCTGTACCCATCAGCAACCGGTCCTGGTGGTATTTGGAGTATTCCAGTGGAGATCAGTTACTCAAGACCTGTTGGTATTCTGTCCTGTTTAAAACATATCACCCAAACAGAAGGTTTGGCAGCCCTGTTTAAGGGCCTTGGGCCTACATTAGTGGGAGTAGCTCCTTCTAGGGCATTGTACTTCACAGTGTATGCTAAAGCTAAACAAGTGCTCAACAGAAGCGGCTTTGTGTTTCCAGAAAGCAAACTTGTACATATTGGATCTGCTTGTTCGGCAGGGATTGTGACCTCAACTTTAACAAGTCCAATCTGGGTCATCAAGACAAGACTACAATTAGACAATAGGGCTTCCAAGGGTCAAGTATTGAAACTTATCCAGAATATATGGAAGGCTGATGGAATAAAAGGTTTCTATAGAGGACTCACTGCAACTTATGTTGGTGTTACAGAAACTGTTATTCACTTTGTAATTTATGAACACATTAAAGCTGAAGTACAAAGACATCGTTTTAAATTGAGAGGCACTCATGACAAGAACATAGTGGACTTTTTGCAATTTATGATGGCTGCTGCAATGTCAAAGTGCATTGCATCTGTTATAGCATATCCACATGAGGTTATCAGAACTCGACTTCGACAGAAAGAAATAGATGGAAAAAGAAGATATCACTCATTCTTCCAGGCTTTCAGGAAAATACTGCGAGAGGAAGGAAGAGTAGGACTTTATGGTGGACTTGGAACTCACCTTCTTCGTCAAGTTCCAAACACTGCATTAATGTTTCTGACTTATGAGGCTGTCGTAAATTTTTTCTCTAAAGAAGATTCTTTATAA

Transcript

rna-pdam_00001745

ATGagtcaaacaaagaaacagcaCTCTGCCATGGTACATTTCGTCGCTGGTGGTTTAGGCGGCTCGTTTGGTGCCTTCGTAACATGTCCTCTCGAGGTGATTCAGACGAGACTTCAATCTTCTGCGTTTCGGCTTCAACGAACAGCAAATCTACGCGTTTCTCGCAATATTTCGTCCAGTGGCCAAGCCGCAAATTTAAGTACAGCTAGTGTGGCTAACTCGAAGCTTAATGTTGCGGCGAATCGCTTCAAAGGAGTATTTTCTTATGGAAGGTACATGGTTCAGCACGAAGGGTTCTTTTCGTTGTACAAAGGATTGGGGCCCACATTACTCGGTGTCACCCCATCAAGAGCAATTTATTTTGCCCTCTATTCCACAACAAAGGAGATACTGAACAAATCTGGCAAGCTAGTTGCCGATTCTTCACTTGTTTATATGACATCCGCGGCTATAGCTTCGTTTGTAAATCACACGGTTACAAATCCTTTGTGGTTCGTCAAAACGCGACTACAGTTGGACAACAGGGAAGCGCGGAGAGTAAATGCTTTCCATATAGTAAGAGATGCTTACAAGAGCGAAGGAATCAGAGCTTTTTACCGAGGACTTTCAGCTTCCTACGTAGGAATCTCAGAAACAGTAGTGCATTTTACGATCTACGAGAAAGTGAAAGCGAGATTGCTAAAGTTTCAACAGAAGACGCAAAGAGACCTGAATGTGATCGAGTGCATGCTGTCAGCCGGCGTTTCCAAATCCATCGCTGCAACTCTTTGCTATCCTCACGAAGTTGCACGAACTCGGCTACGTCAACAAGAAAGTGATTTCCtcggaaaacaaaaatacaattcGTTTCTTCAAACGCTGAAAACAGTTGTGAAAGAGGAAGGATGGAGAGGTCTCTATGGAGGTTTAGGAACCCACTTAATTCGACAAGTTCCAAATACAGTGATAATGTTTTTCACTTACGAAGGAGTCGTGTACCTTTTGGAGATTAGTTACCTAAATACTCGGGGTGAGAAGAAAACGAACCTTTTTCACTGCGAGATCCATCCAGATATGAGTAAAGGAAGATCCCCGTACGTCCATTTAGTGGCTGGAGGTATTGGAGGCACCGTCGGTGCTACATTGACGTGTCCTCTGGAGGTCGTAAAGACGAGATTGCAGTCCTCAGTTCCAACTTTTAGACATGTTCTGTACCCATCAGCAACCGGTCCTGGTGGTATTTGGAGTATTCCAGTGGAGATCAGTTACTCAAGACCTGTTGGTATTCTGTCCTGTTTAAAACATATCACCCAAACAGAAGGTTTGGCAGCCCTGTTTAAGGGCCTTGGGCCTACATTAGTGGGAGTAGCTCCTTCTAGGGCATTGTACTTCACAGTGTATGCTAAAGCTAAACAAGTGCTCAACAGAAGCGGCTTTGTGTTTCCAGAAAGCAAACTTGTACATATTGGATCTGCTTGTTCGGCAGGGATTGTGACCTCAACTTTAACAAGTCCAATCTGGGTCATCAAGACAAGACTACAATTAGACAATAGGGCTTCCAAGGGTCAAGTATTGAAACTTATCCAGAATATATGGAAGGCTGATGGAATAAAAGGTTTCTATAGAGGACTCACTGCAACTTATGTTGGTGTTACAGAAACTGTTATTCACTTTGTAATTTATGAACACATTAAAGCTGAAGTACAAAGACATCGTTTTAAATTGAGAGGCACTCATGACAAGAACATAGTGGACTTTTTGCAATTTATGATGGCTGCTGCAATGTCAAAGTGCATTGCATCTGTTATAGCATATCCACATGAGGTTATCAGAACTCGACTTCGACAGAAAGAAATAGATGGAAAAAGAAGATATCACTCATTCTTCCAGGCTTTCAGGAAAATACTGCGAGAGGAAGGAAGAGTAGGACTTTATGGTGGACTTGGAACTCACCTTCTTCGTCAAGTTCCAAACACTGCATTAATGTTTCTGACTTATGAGGCTGtcgtaaattttttctctaaagaAGATTCTTTATAAATGgttatttattgtttgatattcTGGTTAAGTTAGgttaatttattaattctaAGAGCACTCAGTAAAGAGGggcaaaaaaatcaaggaaagtgtggttttaatttttcttgtaaactgGGTTGCCAACAGTTAATGCCTATTCTTACTGCTGTTCTAAAACCTATGTAGTTATTGTACATGTAGTTATTGTACAGAATACAGTCTTGAGTGACTTGTTTACTATAATTTCGGCAAATGAATTTGATTGCACAAGTATTTTATGAGTTTCAAAGCAATCCATTTAATAAGTAGACTGaaagtttactttaaaaaattgtaaatactGATTTTATACATTTGTAAAGAAGAGACTACCTgaatatgtttgttttactgaaaataattttatcttttcaaagtcatatttaaaattgtaacTGTTGACAAATAAGAGCAAACAAACCTATGAACTAACTTAAATAAAGGTCAACCAACTTCAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR049562 all species →	Family	Solute carrier family 25 member 33/36-like	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45829 all species →	MITOCHONDRIAL CARRIER PROTEIN RIM2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000002 all species →	Biological Process	mitochondrial genome maintenance	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0015218 all species →	Molecular Function	pyrimidine nucleotide transmembrane transporter activity	Interproscan
GO:1990519 all species →	Biological Process	pyrimidine nucleotide import into mitochondrion	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15116	SLC25A33_36, RIM2; solute carrier family 25, member 33/36	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.