Gene detail

Detailed information of RMX55647.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1030:289798...293197
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00001662

ATGAAGCGCAAACTTGAACTAAACACCAAATCCCACCGCCATCGAATGGAGCCCAAACTAAGCATCATCGCTTCCTTGATCCTTTTATTGTTATTTTTAAACCAGTCACAATTGATAATCGCGAAGAGTCCGTCTCGTAAGACACAGCCAACCAAGCATGGAGAGGTGTACCGCGCAAAGAGTCAGATCGATTCTCTGATTTACAAATTAACACTCGATTTAAACACCTCTAATGAAAAGAAAAATCTAGCCAACGTCATGCAAAAAGATGCCGAAAAATTATCTCGAATTGCCGAAGATGAAATCGCCTTATTGAAACCAGTGCAGCGTCTTTTGGATCAACTAGTGAAGGGAAATGCTTCAGGTGGAAATCAAAGCTGTTTTTGCGGCATTCGTGGTGGTAAAACAGCAATAAACATTGCGACAAAAAGCTCTCCTCTGCCTAAACATTACACTATAACTGTACAAGTTAACCATCGTGCACTGATTGATCGAGGATTAACACGTGACAATGGAGATGACCTACAAGTCTACTACCATGCTAACGGACAGCAACCGGTTCAAATAGACCGTGTTCTTAGTGGTGTGGGGACAAAGTCAGCCACAGTCCACTTTAGACTGCAGGCTCGTATGTCAGCCAACACCATTGATGATATCTCTTACTCTTTAATGCTTGGTGATGCAGTCAGCGGAAGTGTTATGGATAACCCTAGACGGGTGTATGCGTTTTATGATGATTTCACGAGCCCTGCCCTAAAGAAGGACTGGGTGAAGAACAATTACGGCAAATGGACTGTGCAAAATGGACGGTTGCTTGGCGATACCATGGCTATTAAGGGAAGAGATTATATAGAGGTCGCATTGTATCTCAAGTCGGGATTTTCTTGGAGAGATATTGAAGTGGAGCTTGACATGATGGAGACTGGGAGTAGAAAAAGTTGTCCTGGACCACTGTTGCGTGTGGCCAATGTTCAACACAGTAAGACCACAGCGTGGTGGTTTGAGTACTGTCCATATAACACTTTTACCTGTACGTTAAGGCCTCAACGCAATAACAAAGATGGTGGCTGGAAATACAACAGCAAACTGTCCAGAGCCTTTGCGCTTCATACTTGGTTTCATTTTAAGTACCAAGTGCTTGGCGACCGATTCTCACAATGGCAGGATGGTAAACTCGTACATAACAATGTAAAAGTCAGCAATGATTGGAACATACCGGGTGGAACGTTTGGCCTGGGTTGTCACACTTCTCCAAACAACTGTAAAACAATCTATGACAACATTAAAATCAGATTCCTGGTTGCTGGTCCTCCAAATATCACTCTCGGAAACTTTGAACCCATTCGTCTCAGTCAAACCAGTATCCTGGGTACAAAGAACCTTCCCGCTGACTCCTGCAAACAAATTCATGATGCAAGTCTAGCAAATAACAAACCGCGCGTCAAGAATGGAGTTTACTGGATAAAGACTGATCTGCAAGGAAGCTCTTTAGTGCAGACTTACTGTGACATGGCCAATGGAGGCTGGACTCTTGTGGGAAAGATCAGTGGCAAAGTTGGCAACATCTACAAGACTTGGCTTGTGTCTAACCACAACACTGCAGCACTGAAAACTCCAAAAATCACTAAACATAAAGATTTTGGCTGCATGGATGCTCGCAGTCTGGCTGTTGAAGCAGCTTCCACGATTCTGTTGTCCAGTGGCGAGAGGACGGATGGCTTGGGAAGCAAGTGGGTTATGTGGAGACTGCCGGGAAACAGAGAAAAAGAAAAGTTCTGGAATCATGCTATTGGTAAATCCGCTGTGCAGGAGGCCGTTGTGACACCTGTACTGGTGCATGCATGGAATGGAAACAAAAAGATCTGTTATCAAAACGAGTTTGGGATAATGCCTTATTCTCTTCATGGAGGATCGTATCCCTACACGTCTCTCAAACACGGAGGCGGAATTTTGGCTGTGAACGACTACTGTATGGCTGTGGGTGTCAACACTAAGGGTTCTCTGGCGCACGGCTGGAGAAATAATGGCTATGCTAACGATTGTCCAAGCAGCGATTCTGATTGGCCCAACAAGTCGTACAAACACGGTTCCCCTTATCTGACGGTGTGGCTCAAGTGA

Transcript

rna-pdam_00001662

ATGAAGCGCAAACTTGAACTAAACACCAAATCCCACCGCCATCGAATGGAGCCCAAACTAAGCATCATCGCTTCCTTGAtccttttattgttatttttaaaccaGTCACAATTGATAATCGCGAAGAGTCCGTCTCGTAAGACACAGCCAACCAAGCATGGAGAGGTGTACCGCGCAAAGAGTCAGATCGATTCTCTGATTTACAAATTAACACTCGATTTAAACACCtctaatgaaaagaaaaatctagcCAACGTCATGCAAAAAGATGCCGAAAAATTATCTCGAATTGCCGAAGATGAAATCGCCTTATTGAAACCAGTGCAGCGTcttttggatcaactagtgAAGGGAAATGCTTCAGGTGGAAATCAAAGCTGTTTTTGCGGCATTCGTGGTGGTAAAACAGCAATAAACATTGCGACAAAAAGCTCTCCTCTGCCTAAACATTACACTATAACTGTACAAgTTAACCATCGTGCACTGATTGATCGAGGATTAACACGTGACAATGGAGATGACCTACAAGTCTACTACCATGCTAACGGACAGCAACCGGTTCAAATAGACCGTGTTCTTAGTGGTGTGGGGACAAAGTCAGCCACAGTCCACTTTAGACTGCAGGCTCGTATGTCAGCCAACACCATTGATGATATCTCTTACTCTTTAATGCTTGGTGATGCAGTCAGCGGAAGTGTTATGGATAACCCTAGACGGGTGTATGCGTTTTATGATGATTTCACGAGCCCTGCCCTAAAGAAGGACTGGGTGAAGAACAATTACGGCAAATGGACTGTGCAAAATGGACGGTTGCTTGGCGATACCATGGCTATTAAGGGAAGAGATTATATAGAGGTCGCATTGTATCTCAAGTCGGGATTTTCTTGGAGAGATATTGAAGTGGAGCTTGACATGATGGAGACTGGGAGTAGAAAAAGTTGTCCTGGACCACTGTTGCGTGTGGCCAATGTTCAACACAGTAAGACCACAGCGTGGTGGTTTGAGTACTGTCCATATAACACTTTTACCTGTACGTTAAGGCCTCAACGCAATAACAAAGATGGTGGCTGGAAATACAACAGCAAACTGTCCAGAGCCTTTGCGCTTCATACttggtttcattttaagtACCAAGTGCTTGGCGACCGATTCTCACAATGGCAGGATGGTAAACTCGTACATAACAATGTAAAAGTCAGCAATGATTGGAACATACCGGGTGGAACGTTTGGCCTGGGTTGTCACACTTCTCCAAACAACTGTAAAACAATCTATGACAACATTAAAATCAGATTCCTGGTTGCTGGTCCTCCAAATATCACTCTCGGAAACTTTGAACCCATTCGTCTCAGTCAAACCAGTATCCTGGGTACAAAGAACCTTCCCGCTGACTCCTGCAAACAAATTCATGATGCAAGTCTAGCAAATAACAAACCGCGCGTCAAGAATGGAGTTTACTGGATAAAGACTGATCTGCAAGGAAGCTCTTTAGTGCAGACTTACTGTGACATGGCCAATGGAGGCTGGACTCTTGTGGGAAAGATCAGTGGCAAAGTTGGCAACATCTACAAGACTTGGCTTGTGTCTAACCACAACACTGCAGCACTGAAAACTCCAAAAATCACTAAACATAAAGATTTTGGCTGCATGGATGCTCGCAGTCTGGCTGTTGAAGCAGCTTCCACGATTCTGTTGTCCAGTGGCGAGAGGACGGATGGCTTGGGAAGCAAGTGGGTTATGTGGAGACTGCCgggaaacagagaaaaagaaaagttctgGAATCATGCTATTGGTAAATCCGCTGTGCAGGAGGCCGTTGTGACACCTGTACTGGTGCATGCATGGaatggaaacaaaaagATCTGTTATCAAAACGAGTTTGGGATAATGCCTTATTCTCTTCATGGAGGATCGTATCCCTACACGTCTCTCAAACACGGAGGCGGAATTTTGGCTGTGAACGACTACTGTATGGCTGTGGGTGTCAACACTAAGGGTTCTCTGGCGCACGGCTGGAGAAATAATGGCTATGCTAACGATTGTCCAAGCAGCGATTCTGATTGGCCCAACAAGTCGTACAAACACGGTTCCCCTTATCTGACGGTGTGGCTCAAGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06439 all species →	3keto-disac_hyd	3-keto-disaccharide hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR010496 all species →	Domain	3-keto-disaccharide hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16146 all species →	INTELECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0070492 all species →	Molecular Function	oligosaccharide binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX55647.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.