Detailed information of RMX55726.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1018:58418...80931
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008853 (this species only) · gene tree & orthology
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyUBD|ZnF|NZF · all ubiquitin genes in this species
Ubiquitin familyDUB|OTU|OTU · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02338
all species →		OTUOTU-like cysteine proteaseFamilyInterproscan
PF18418
all species →		AnkUBDAnkyrin ubiquitin-binding domainRepeatInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001876
all species →		DomainZinc finger, RanBP2-typeInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR003323
all species →		DomainOTU domainInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR051973
all species →		FamilytRNA Anticodon Loop Methyltransferase RegulatorInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR049768
all species →		DomainUbiquitin thioesterase ZRANB1, ovarian tumor domainInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR041294
all species →		DomainAnkyrin ubiquitin-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14344
all species →		WD REPEAT PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0030488
all species →		Biological ProcesstRNA methylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for RMX55726.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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