Gene detail

Detailed information of RMX55773.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1009:4887...30555
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00020909

ATGGTTAAAACGTGTACCTTAGCAGCGCTATCTGAGAGCTGTGACTTCCACTGCTTGATCGTCAAAGAAGATAGAAAGTGGTGGTACTTTATCGCAACAAGCGGCGCAATTTTCTTTGGGGGATTGTTGGTCATATTAGCTTCAAGGCTGTTTATTAAAATATGCAACTCAAAACAGAGCAGGTTAAACCCAACTAAAAAGGATGCCAACAAGCAGCGGATTAATCGGTCGCACGTCGCACCGGAAGTGCAGAAACGAGGGATTTATGTCAAACTTAAGGAACAAGCCGGTACACTGATAACAGCACAGACCTTCAAGGGCCGATGTTTGGTTGTAATTTCATTCCTCCTAAGCATGCTTTATATCGTCTTGTATGCTGTAGAGGCAAGTTACCCTGTCGAGCATTGTCTGGACATGAAAATACAAAAGCTCTGGATATTTGACATTGCTTTTAATCTTTTCTTCTTGCTTCATTTTCTTCTTCGGTTCCTTGCAGCAAATGATAAGCTGATGTTTTGGGTGGAGACGTTATCTTTGGTGGACCTCCTGACGATACCTCAAGTGTTTGTTTCTGTTGTCCTTCAACAGAACTGGCTGGGATTAAGATTTCTTCGTGCTATGCAGTTTATTAGGCTTGCAGATATTCTTCAATTCTTGGGAATTATTAACTCAAGTGGGATCATTACACTTACAGTCATGATTGGTAACTTGTTCGCTCTCATCTTTACATCTGCTGGGATTCTTCATCTGGTTACAATGAGTACAGTGGGATTTGGTGACATATCTGCTATAACATATTTTGGAAGGACTTTTATGATCATATTCATTTCCATTGGCCTGGGTATGTTTGCCACTTACATCCCAGCAATCTTGGAATATTTGGGTAGCCACACAGTTTATCATGGCTCATACAAACTCTCTGAAGGAAGAAACTTTTTGCCAGATGCAGAAATGCAGTCCCTGCTCAAGAAACATTTTGTTCATGTATCGTACTTCAAGGGCACAGTTCTGAGTGCAGAGGACTGCAAAAGAGTTAAGATGAAAGTAGCTGATTCCTGTATCGTATTGTGTAACAGAGAGTGTGTTAATCCCAGTGAAGAGGATTCTGAGAATATCATGAGAGTTGTAGCTGTGAAGAATTACTACCCAGGAATAAGAGTCATCATACAGCTGCTTCAGTATCAGAACAAGTCGTACCTATTGAATATTCCATCATGGAATCCCAAACGTGGAGATGATGTTGTTTGCATCAGTGAACTCAAGTTGGGATTTATTGCCCAAAGCTGTTTGTCACCGGGATTTTCAACACTTTTGGCCAATGTTTTCTCAATGCGTTCACATGAAACATCAGACACTACAGAGTCAGACTCGTGGAAGACCTACTACATTGAAGGAGCAAACCTTGAATTATACACTGAAACATTATCAAGTTCGTTCAAAGGAATGACGTTCCAACAAGTTGCTGAGATTTGTTTTGGTAAGCTTGGCCTCCTGCTCATTGCCATAGAAACTATTAAACCTGATGGAGAAAAAGTATTCAACATCAATCCTTTGGACAAGACCATTGAACAACGGACACGAGGATACTTCATAGCTGATTCCGCATCTGAAGTCAAGAGGGCTTTACATTACTGTGTAAATTGTCATGCTGATGTGAAACAACCAGAGCTGATAAAAGAGTGCGACTGCTCCAAAGAAAATGAGACAGATGTTCACTTAACTGGTGTAGTCAACCATGCTGTTGATCATGACACAGCCTATTTGTGTTTTGCACCAGAAGGCAAACAAAGAAATGGCAAACCACCAGGCAAGTTTGACGTTTACAAGGAAAGAAATCACAATCGACGAAACAACAAACCTCATGGCGGTTCAAGAAATCTGCTATTTGTGGAAGCCGTGTGGAGTTCAAAAAATGCATCTGTTAGTGATCATTGTATAGAAGTGGAAGAGTTTAAAGCGGTCGACCCGAGACTGTCTTTTAGTTTAACAAACAAACAAGGTGGAGAGGCAAAGCAGGGCACCTACAAAGTTCTACACAAGCTTAAAGCTTTAAAAGAGCAACAAGCAAATGATGGTGAAAAGAAGCCTTGTTTTGACATCTCAGGGACGTTTTATTGGTGCCAGCCGACGCGATTTGAGAATGTTTTGCTGACTCGAGAGGATGCTGTGAATATCGTTTTCTCGCATCATATACTTGTCTGCGTTTTCAACGAGGAAGACGCCCCGCTTCTGGGATTGAGACCATTGGTCATACCTTTAAGAGCTAGCAATCTGCTGCAATCTGAACTCAAGAAAATTGTCTTTCTTGGAAACAAGGAGTACATGGCGAGAGAGTGGCATCAGTTGTGCAATTTTGAGGATGTTTTCGTTCTTCCGGGCTCTCCATTTTGCCGAGCGGATCTGCGGGCTGTCAATGCAAACTTGGCGGACATGGTCGTTTTCTTGTCGCCTTCTACGGCTAGAAAAACCGACGACCCGAAGCTGGCCGATAAGGAATCGATTTTAGCGTCGTTGAATCTGAAAGCCATGTCATTTGACGACGCGGTTGGAATGCTAAGCGAGAGTACAAGGAATGCTTTTGCGGGTCCAGAGTTTCACGAGGCGCCGCAAGTGGAGAGAAGAGGCTCAGCTTATGGATGCAATGTCCCAATAATTACAGAAGTTGCTTTTGACCAGAGTGTGCAGTACCTAGACATTGATGACGAAGACGATGACGACCTTGAACTCTACCTCACCCAGCCGTTCGCTTGTGGTACAGCTTTTACTGTCTCCATGCTGGATTCGTTGATGAGCGCGAGCTACTTCAACCCAGACGTGCTAACGCTCGTGCGGAATCTGGTAACCGGTGGCGTGAACCAGTTTCTAGAGGAACATATCGCTGAAGGAGACGAGCTAAAAGGAGGCCTGGACGCTGCACAGACAGCAGACACTAGGAGCCGGTGTAAAATTGTGCAGATATCGCTGTTTGATGGTCCACTGGCGCAGTACGGAGATGGTGGCAAGTTTGGCGACATGTTTTTGCACGCCTTGCAGTCCTCGTCTATGATCTGCTTGGGTCTCTACCGCTTCCGTGACAGTAACAAAATCAACATTGGAATTCCGTCTGCCAAACGGTACGTGATTTGCTCGCCGCCATACAACTTTGTACTTCAGCAAACAGACCTGGTGTTTGTGCTGGCACACTCAGATCCACAGCTTGAAAAATTCAAATAG

Transcript

rna-pdam_00020909

AGTCTGAATCTTGAAGAACTTCGAGGATTACAGTTGTACACGTTAATGGCTCGTCAAAAGAATAAATGGGATATTTCTGCGCTGGATCACCATGGTTAAAACGTGTACCTTAGCAGCGCTATCTGAGAGCTGTGACTTCCACTGCTTGATCGTCAAAGAAGATAGAAAGTGGTGGTACTTTATCGCAACAAGCGGCGCAATTTTCTTTGGGGGATTGTTGGTCATATTAGCTTCAAGGctgtttattaaaatatgCAACTCAAAACAGAGCAGGTTAAACCCAACTAAAAAGGATGCCAACAAGCAGCGGATTAATCGGTCGCACGTCGCACCGGAAGTGCAGAAACGAGGGATTTATGTCAAACTTAAGGAACAAGCCGGTACACTGATAACAGCACAGACCTTCAAGGGCCGATGTTTGGTTGTAATTTCATTCCTCCTAAGCATGCTTTATATCGTCTTGTATGCTGTAGAGGCAAGTTACCCTGTCGAGCATTGTCTGGACatgaaaatacaaaagctCTGGATATTTGACATtgcttttaatcttttcttcttgcttcattttcttcttcggTTCCTTGCAGCAAATGATAAGCTGATGTTTTGGGTGGAGACGTTATCTTTGGTGGACCTCCTGACGATACCTCaagtgtttgtttctgttgtcCTTCAACAGAACTGGCTGGgattaaGATTTCTTCGTGCTATGCAGTTTATTAGGCTTGCAGATATTCTTCAATTCTTGGGAATTATTAACTCAAGtggGATCATTACACTTACAGTCATGATTGGTAACTTGTTCGCTCTCATCTTTACATCTGCTGGGATTCTTCATCTGGTTACAATGAGTACAGTGGGATTTGGTGACATATCTGCTATAACATATTTTGGAAGGACTTTTATGATCATATTCATTTCCATTGGCCTGGGTATGTTTGCCACTTACATCCCAGCAATCTTGGAATATTTGGGTAGCCACACAGTTTATCATGGCTCATACAAACTCTCTGAAGGaagaaacTTTTTGCCAGATGCAGAAATGCAGTCCCTGctcaagaaacattttgttcatGTATCGTACTTCAAGGGCACAGTTCTGAGTGCAGAGGACTGCAAAAGAGTTAAGaTGAAAGTAGCTGATTCCTGTATCGTATTGTGTAACAGAGAGTGTGTTAATCCCAGTGAAGAGGATTCTGAGAATATCATGAGAGTTGTAGCTGTGAAGAATTACTACCCAGGAATAAGAGTCATCATACAGCTGCTTCAGTATCAGAACAAGTCGTACCTATTGAATATTCCATCATGGAATCCCAAACGTGGAGATGATGTTGTTTGCATCAGTGAACTCAAGTTGGGATTTATTGCCCAAAGCTGTTTGTCACCGGGATTTTCAACACTTTTGGCCAATGTTTTCTCAATGCGTTCACATGAAACATCAGACACTACAGAGTCAGACTCGTGGAAGACCTACTACATTGAAGGAGCAAACCTTGAATTATACACTGAAACATTATCAAGTTCGTTCAAAGGAATGACGTTCCAACAAGTTGCTGAGATTTGTTTTGGTAAGCTTGGCCTCCTGCTCATTGCCATAGAAACTATTAAACCTGATGGAGAAAAAGTATTCAACATCAATCCTTTGGACAAGACCATTGAACAACGGACACGAGGATACTTCATAGCTGATTCCGCATCTGAAGTCAAGAGGGCTTTACATTACTGTGTAAATTGTCATGCTGATGTGAAACAACCAGAGCTGATAAAAGAGTGCGACTGCTCCAAAGaaaatgagaCAGATGTTCACTTAACTGGTGTAGTCAACCATGCTGTTGATCATGACACAGCCTATTTGTGTTTTGCACCAGAaggcaaacaaagaaatggcAAACCACCAGGCAAGTTTGACgtttacaaggaaagaaatcacAATCGACGAAACAACAAACCTCATGGCGGTTCAAGAAATCTGCTATTTGTGGAAGCCGTGTGGAGTTCAAAAAATGCATCTGTTAGTGATCATTGTATAGAAGTGGAAGAGTTTAAAGCGGTCGACCCGAGACTGTCTTTTagtttaacaaacaaacaaggtGGAGAGGCAAAGCAGGGCACCTACAAAGTTCTACACAAGCTTAAAGCtttaaaagagCAACAAGCAAATGATGGTGAAAAGAAGCCTTGTTTTGACATCTCAGGGACGTTTTATTGGTGCCAGCCGACGCGATTTGAGAATGTTTTGCTGACTCGAGAGGATGCTGTGAATATCGTTTTCTCGCATCATATACTTGTCTGCGTTTTCAACGAGGAAGACGCCCCGCTTCTGGGATTGAGACCATTGGTCATACCTTTAAGAGCTAGCAATCTGCTGCAATCTGAACTCaagaaaattgtctttcttGGAAACAAGGAGTACATGGCGAGAGAGTGGCATCAGTTGTGCAATTTTGAGGATGTTTTCGTTCTTCCGGGCTCTCCATTTTGCCGAGCGGATCTGCGGGCTGTCAATGCAAACTTGGCGGACATGGTCGTTTTCTTGTCGCCTTCTACGGCTAGAAAAACCGACGACCCGAAGCTGGCCGATAAGGAATCGATTTTAGCGTCGTTGAATCTGAAAGCCATGTCATTTGACGACGCGGTTGGAATGCTAAGCGAGAGTACAAGGAATGCTTTTGCGGGTCCAGAGTTTCACGAGGCGCCGCAAGTGGAGAGAAGAGGCTCAGCTTATGGATGCAATGTCCCAATAATTACAGAAGTTGCTTTTGACCAGAGTGTGCAGTACCTAGACATTGATGACGAAGACGATGACGACCTTGAACTCTACCTCACCCAGCCGTTCGCTTGTGGTACAGCTTTTACTGTCTCCATGCTGGATTCGTTGATGAGCGCGAGCTACTTCAACCCAGACGTGCTAACGCTCGTGCGGAATCTGGTAACCGGTGGCGTGAACCAGTTTCTAGAGGAACATATCGCTGAAGGAGACGAGCTAAAAGGAGGCCTGGACGCTGCACAGACAGCAGACACTAGGAGCCGGTGTAAAATTGTGCAGATATCGCTGTTTGATGGTCCACTGGCGCAGTACGGAGATGGTGGCAAGTTTGGCGACATGTTTTTGCACGCCTTGCAGTCCTCGTCTATGATCTGCTTGGGTCTCTACCGCTTCCGTGACAGTAACAAAATCAACATTGGAATTCCGTCTGCCAAACGGTACGTGATTTGCTCGCCGCCATACAACTTTGTACTTCAGCAAACAGACCTGGTGTTTGTGCTGGCACACTCAGATCCACagcttgaaaaattcaaatagtGACGTTTTAACATGTTTATTGGTTTTATACGAGAAAGATCTCACTGCATATCCCACTACCATTGCGTGACAACGTAGGATGAAATTTTAAGTCGCTTCTTGTCACGCAATTGTCAGGTGTCTGTCGTAGCAGAGTTTCGATGATATTTCGGCCAAGAAAAATGTGCACGCAATTTGGTGATAATATAAGCACATAAACTTGAAGTTTGGGGATAACATACTTtcattcaagttttgtttaactATTTTGGGTAAGTCACACCAAATTTAAAGTCCCAATGGAAACaagaattgaatgaaaatcgGTAAATGGGCACTTTTATCTCCAAGTTAGGGCTTTGATATGAGTTAAAAAACGTACGCgaatagaatttttttaagagtcaTTAGTAATTGACACAAAACAGATTGAATTAGGTTGACCTTGGTAATTAATTGTATACTTAATGCACTACAGGTAAACTTAATCATAACAACCACGATCTACGAAATGTACGAATATGCGTGGGTAGAAATTAAGCTTGGAGCTTGGGGATGAAAGGGGTAATTCCAACCTCCCTTCCCACAACTGGTCAagatgtaatttctcccttcagTGTATTGAGTGCATTGGTAGTAGGAATAttgcaaattgtaaaattatcttgttacaGTTGGATTTTGCGAAAATTCACGGAAAACGTTTTACATGTAGTAGTTTGCTTTTAGATTTGAGAAAGTATTACCGTTGGTACGAGAAAAgtttatatatttaatttcttatttattttcaagttttcatatttttggtttaattgTTTGGTaaggtatttatttcttcatattcaattgtttattggaaaaaaagtaatttattaaCGGCATTAGCCATTCAGTACCGCATGCTTACGTTCAAAACGCTGTCGATCATAAGGGCCCAATGAGAGCCTGATATTTAGTGTTTTCGTTTAGTTCTTACGTAcagataaaataaagtaagTTCATAGAGTGCAGTCATATAGCGTCGTGTAGCGATTTTCGATGGAGAGTTGTAAAATCAAATCCAAATTAATGAGAGAGGAAATGGTGATCGTAGTGGGTAGTCAGAACAAACGAAAATAGCAGAGAGAGTTATTGAGaagtcaaaatgaaaaagaaaaaaaactgtaacaacaacaaaacaacaacaaaaaacagttAGGTCCACAAAGCATGAGAAAACGCGAGTGGATAAGTCTTggttggttttaattttaaatattattggCTGAGAGTCTAGTGCATGTTTTCCTGATCAATTACAGGGACGCTctgttaaaactgaaaatgaaaacggTTCAATGTAGGACGATTTTTGCAACTCGGTTGAAAATTACTTCAgcagccattttgttttatatacaCTATATACAGTCTGCCATCCACGCACTTGTCAGAGTTGAACTGTCAATGCATTCGCTCTCGTTTGTTTCAAGAAACAAGTATGACCGCCGGTGATGCTAATGAATGTACTCTTTTGAACGGATAGGAAGTCTTAATTGTCCTGAatcttttgaaagtgtttagTGTGTCGAGATCGGCCGAAAATCTAGGAGCAAAGACTGATATCACATCGAATTTTCTTCTGgctcactttttttaattaattacttAATATTTCACAAAGGAAGTCCAATAAGTAAGTAGATTAAAAATTCTAAACCACTATTTCAGTTGAGggaaaattttgtataaaacATCGGAAATATTTGTAATGTTACAGCTGCTGATCGGCTGTTTATTTAATAAGAGATTTTTTTAGCTGATACGAAGTATCTGGTAACTTTTATGTCAATTCACTCTGCAAGAggttttaaataaatcataacagttttaaagtaaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03493 all species →	BK_channel_a	Calcium-activated BK potassium channel alpha subunit	Family	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF21014 all species →	Slowpoke_C	Ca2+-activated K+ channel Slowpoke, TrkA_C like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047871 all species →	Family	Calcium-activated potassium channel slowpoke-like	Interproscan
IPR003929 all species →	Domain	Calcium-activated potassium channel BK, alpha subunit	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR048735 all species →	Domain	Ca2+-activated K+ channel Slowpoke-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10027 all species →	CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005267 all species →	Molecular Function	potassium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0045211 all species →	Cellular Component	postsynaptic membrane	Interproscan
GO:0060072 all species →	Molecular Function	large conductance calcium-activated potassium channel activity	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04936	KCNMA1, KCA1.1; potassium large conductance calcium-activated channel subfamily M alpha member 1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.