Gene detail

Detailed information of RMX55807.1 in Pocillopora damicornis

Genomic Location: SczhEnG_999:189708...191956
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13867 all species →	SAP30_Sin3_bdg	Sin3 binding region of histone deacetylase complex subunit SAP30	Family	Interproscan
PF13866 all species →	zf-SAP30	SAP30 zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024145 all species →	Family	Histone deacetylase complex subunit SAP30/SAP30-like	Interproscan
IPR025718 all species →	Domain	Histone deacetylase complex subunit SAP30, Sin3 binding domain	Interproscan
IPR025717 all species →	Domain	Histone deacetylase complex subunit SAP30 zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13286 all species →	SAP30	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000118 all species →	Cellular Component	histone deacetylase complex	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19202	SAP30; histone deacetylase complex subunit SAP30	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.