Gene detail

Detailed information of RMX55808.1 in Pocillopora damicornis

Genomic Location: SczhEnG_999:204300...208384
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00009553

ATGCGACTGAGGTACATTACACCGTTATGGAGAGGTGGTTACGTAAGCACGTGTTCGTTTCAAAGAACGTTTCTGTCTTCAGAGGCTCCACATTACGGTAAGACCCTTGAAAACGGCCAAAATTTGGATTCCGAAACGAAGGAAAATGGCAACGGAGATATTATAGGAGCTGTGAAGTTATTTGAAGCCATCAAACATTACACTAAATCCAGTAATATACAAAACAAGACTAAATTGCTGAAATCTTACTGCGACTGGGGACTTTACGAACAAGCCATGAAAATTGTGCGTTCCATCGTCAATCTTAAGGTTTACGACACAGATGCTTATGACTTGGTAATAACCAGTATGGCAACGCGTAGACAGATAGGAAAAGCCATACAGGTCTTCGAGGAGAAATTGAAGAGGCAACAACACTTTCCAACCAAAGTATACTTAAGTGAATACGTCACGGAAATGATTGAACTGCTCCTCAATCCTGAAAATCTGATAATTAAGGGAGAGGTTTTTGATGAACATCGTCATACTAGAACATCACAGATAGTGTTTCGTTATCTTGAACAAAATGGGGAAAGATTACCATTAAGATTAATTCGTGCAATTCACTCGTGGCTCATGCATGATCCAAATAACTACTGGACTTGGCAGAACTGCACAATTAGTGAAGCAGGAAAATGCTCTTTCTGTGGTAATATGTTGATAAACCGCTTACCCTTAGAGGATGTACGCCAGTTGAAATTTGAAATCCTAAGGCTTTTTGAAATTCCACAGAAGTCTACTTTTAAACTGAACGATATAAGTTTAGAAGACCAGATGTACCAAGAGATACAAGAATTGAAGATGTTTGTCAAAGAAAAGGGGCCATTTGACGTAATTATTGATGGCTTGAATGTCCTTTGCACAGAATCAAAATTTAAGTTATCATCACACAGGCTATTAGAAATGGTAAATCACTTTGCCATACAACAGAAGAATGTTATGGTTGTATTATCTAAGAAAGAACTGGAAAATAGGAAAGCCACTAGGGCTCTCAAAACTACTAATTGTGCTGTTTTCATGAGCAGCTTTGGAAATGATGATTTGTACCTTTTGTATGCTGCAGCCATGAGTGGATTGCGATATGTTGAGGTTGTCACCAATGACAAACTCCGAGATCACCGCCTTTTATTCCCAGCTGAAGTGGGATGGATATTCTCAAGATGGACACGGTTAAACCGTGTAAGCTTTACAAAAGGAGGAAAAGGAAAACTGCAATTTTTCAGAGACAGAGTTGACCCTGTTGTGCAGTACAATGGGAATTCATGGCACTTTCCTGTTGCTAATGAAGCATGGAGGTGTTCAAGGAGATCAAAACGTTTAGGAACATTCAGCTGCTTTATCCAACGGGAACCCGGTATGATTCGGCTGAGGTGTCGTACATCGAGAAAGAGAGCTTGTGTAGCAAGCACGTGTCTGCTTTTCAGATCCTTTCTATGTTCAAAAGCTTCAACTTCTGTTCATACCCATGGAAACGGCCAAAATGTAGAGACTGAAACGACGATGAAACACTACATTAAGACTGGTAAGGTAACGGATGCCGTAAGGCTATTTGAAGAGAGCAGGAACGGTGGAAAGTCGTGGAAAATAGACGGTTGTTACTCTTGGCTATTACATTTGTTTGTGCAACACAATGAACATGAAGCTGTAGACAAGCTGTACGAAGACATTAAACGAAATGCTATTTTCATTGGCGAAGGAGCTAAATTCTCGATGATTAAATCTTACAGCAATCGGGGACTTTTTGACCTGGCTGTCGGCATGCTGCACGCCATTGTGGAAAGAAATATAGCTCACCACACTCGTCATTATGATTATATCATTACCTCTATGGCCAAGAGGGGACAATCGAGAAGAGCTTTGCGGGTCTTTGAGGAGAAACTAGAAAGGTTGGAAAATTTCGGAATTAATGAAAACATGTCTGCGCCAATCAAAGACATGATTGAATTGCTTCTTAACCCTAAAAGTCTCCCAGTTAAAGAGAACGATCATGGTAAGGAAGGCAAAGTTGATACAAACCATCACAAGAAAATGTCAAATATGGTTTTTAGTTATCTTCAACAAACTGGTGAAAGGTTACCGGTTAAATTGCTTGTAGCAGTTCGCTCTTGGCTGAATCACGACCCTGTTTATCACTGGAAGTGGAAATACAGCAGAATAAGCGAAGTAGGAACATGCTCATCTTGTGGAAATCAATTGATGAGTGGCATCCTCCCAGGAGATATACAACAATTGGAAAGGGAGCTAATCAAACTGTCCAACAGCCCTCAACTGGTTATTTCCAAAGTGGCAGGTGAAAATCTGGACAAGAAAATACAGAAAGAGTTGGAAGAATTGAAGAGCTTTATTCAAAGAAGAGGACCATTTGATGTGGTAATTGATGGCATGAATGTTGCTGCCTATGGCTCAGGAGCAAATATGTCATTTTCCACAGACAGGCTGGTAGCCACGGCACATCACTTTGCGGCGCAACAAAAGAAAGTGCTTGTGATAGTAAACAAAGTTTGGAGAACTTCTGTCTACAAGCTTGAAGATGTTTGTGCTGTTTTCAGGAACAAGTTTAAAAATGATGACTTGTATGTTTTGTATGCTGCAGCTTTCAGTGGAATGCAACAAGTTGAGGTTGTCACCAACGACAGACTCAGAGATCATCGCCTTCTGCTTCCTAGCAATGTTTGGTGGACATATTTAAGATGGACAAGACTAAACTGTGTATCCTTCACAGTCAATGAAAGAGGGAAACTGGAATTTTTCAGGCAAAAAGTTGATCCAGTGGTGCAGCGTAGTGGCAGCTCCTGGCACTTCCCTGTTGAGGATCGATCATGGAGATGTGCGACAAAATCAGGAATTAAGAGATCACAAATCAAAAATTAG

Transcript

rna-pdam_00009553

ATGCGACTGAGGTACATTACACCGTTATGGAGAGGTGGTTACGTAAGCACGTGTTCGTTTCAAAGAACGTTTCTGTCTTCAGAGGCTCCACATTACGGTAAGACCCTTGAAAACGGCCAAAATTTGGATTCCGAAACGAAGGAAAATGGCAACGGAGATATTATAGGAGCTGTGAAGTTATTTGAAGCCATCAAACATTACACTAAATCCAGTAATATACAAAACAAGACTAAATTGCTGAAATCTTACTGCGACTGGGGACTTTACGAACAAGCCATGAAAATTGTGCGTTCCATCGTCAATCTTAAGGTTTACGACACAGATGCTTATGACTTGGTAATAACCAGTATGGCAACGCGTAGACAGATAGGAAAAGCCATACAGGTCTTCGAGGAGAAATTGAAGAGGCAACAACACTTTCCAACCAAAGTATACTTAAGTGAATACGTCACGGAAATGATTGAACTGCTCCTCAATCCTGAAAATCTGATAATTAAGGGAGAGGTTTTTGATGAACATCGTCATACTAGAACATCACAGATAGTGTTTCGTTATCTTGAACAAAATGGGGAAAGATTACCATTAAGATTAATTCGTGCAATTCACTCGTGGCTCATGCATGATCCAAATAACTACTGGACTTGGCAGAACTGCACAATTAGTGAAGCAGGAAAATGCTCTTTCTGTGGTAATATGTTGATAAACCGCTTACCCTTAGAGGATGTACGCcagttgaaatttgaaatcctAAGGCTTTTTGAAATTCCACAGAAGTCTACTTTTAAACTGAACGATATAAGTTTAGAAGACCAGATGTACCAAGAGATACAAGAATTGAAGATGTTTGTCAAAGAAAAGGGGCCATTTGACGTAATTATTGATGGCTTGAATGTCCTTTGCACAGaatcaaaatttaagttatcatCACACAGGCTATTAGAAATGGTAAATCACTTTGCCATACAACAGAAGAATGTTATGGTTGTATTATCTAAGAAAGAACTGGAAAATAGGAAAGCCACTAGGGCTCTCAAAACTACTAATTGTGCTGTTTTCATGAGCAGCTTTGGAAATGATGATTTGTACCTTTTGTATGCTGCAGCCATGAGTGGATTGCGATATGTTGAGGTTGTCACCAATGACAAACTCCGAGATCACCGCCTTTTATTCCCAGCTGAAGTGGGATGGATATTCTCAAGATGGACACGGTTAAACCGTGTAAGCTTTACaaaaggaggaaaaggaaaactgcaaTTTTTCAGAGACAGAGTTGACCCTGTTGTGCAGTACAATGGGAATTCATGGCACTTTCCTGTTGCTAATGAAGCATGGAGGTGTTCAAGGAGATCAAAACgTTTAGGAACATTCAGCTGCTTTATCCAACGGGAACCCGGTATGATTCGGCTGAGGTGTCGTACATCGAGAAAGAGAGCTTGTGTAGCAAGCACGTGTCTGCTTTTCAGATCCTTTCTATGTTCAAAAGCTTCAACTTCTGTTCATACCCATGGAAACGGCCAAAATGTAGAGACTGAAACGACGATGAAACACTACATTAAGACTGGTAAGGTAACGGATGCCGTAAGGCTATTTGAAGAGAGCAGGAACGGTGGAAAGTCGTGGAAAATAGACGGTTGTTACTCTTGGCTATTACATTTGTTTGTGCAACACAATGAACATGAAGCTGTAGACAAGCTGTACGAAGACATTAAACGAAATGCTATTTTCATTGGCGAAGGAGCTAAATTCTCGATGATTAAATCTTACAGCAATCGGGGACTTTTTGACCTGGCTGTCGGCATGCTGCACGCCATTGTGGAAAGAAATATAGCTCACCACACTCGTCATTATGATTATATCATTACCTCTATGGCCAAGAGGGGACAATCGAGAAGAGCTTTGCGGGTCTTTGAGGAGAAACTAGAAAGGTTGGAAAATTTCggaattaatgaaaacatgtCTGCGCCAATCAAAGACATGATTGAATTGCTTCTTAACCCTAAAAGTCTCCCAGTTAAAGAGAACGATCATGGTAAGGAAGGCAAAGTTGATACAAACCATcacaagaaaatgtcaaatatGGTTTTTAGTTATCTTCAACAAACTGGTGAAAGGTTACCGGTTAAATTGCTTGTAGCAGTTCGCTCTTGGCTGAATCACGACCCTGTTTATCACTGGAAGTGGAAATACAGCAGAATAAGCGAAGTAGGAACATGCTCATCTTGTGGAAATCAATTGATGAGTGGCATCCTCCCAGGAGATATACAACAATTGGAAAGGGAGCTAATCAAACTGTCCAACAGCCCTCAACTGGTTATTTCCAAAGTGGCAGGTGAAAATCTGGACaagaaaatacagaaagaGTTGGAAGAATTGAAGAGCTTTATTCAAAGAAGAGGACCATTTGATGTGGTAATTGATGGCATGAATGTTGCTGCCTATGGCTCAGGAGCAAATATGTCATTTTCCACAGACAGGCTGGTAGCCACGGCACATCACTTTGCGGCGCAACAAAAGAAAGTGCTTGTGATAGTAAACAAAGTTTGGAGAACTTCTGTCTACAAGCTTGAAGATGTTTGTGCTGTTTTCAGgaacaagtttaaaaatgatgaCTTGTATGTTTTGTATGCTGCAGCTTTCAGTGGAATGCAACAAGTTGAGGTTGTCACCAACGACAGACTCAGAGATCATCGCCTTCTGCTTCCTAGCAATGTTTGGTGGACATATTTAAGATGGACAAGACTAAACTGTGTATCCTTCACAGTCAATGAAAGAGGGAAACTGGAATTTTTCAGGCAAAAAGTTGATCCAGTGGTGCAGCGTAGTGGCAGCTCCTGGCACTTCCCTGTTGAGGATCGATCATGGAGATGTGCGACAAAATCAGGAATTAAGAGATCACAAATCAAAAATTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16953 all species →	PRORP	Protein-only RNase P	Domain	Interproscan
PF01535 all species →	PPR	PPR repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR031595 all species →	Domain	Protein-only RNase P, C-terminal	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13547 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001682 all species →	Biological Process	tRNA 5'-leader removal	Interproscan
GO:0004526 all species →	Molecular Function	ribonuclease P activity	Interproscan
GO:0030678 all species →	Cellular Component	mitochondrial ribonuclease P complex	Interproscan
GO:0097745 all species →	Biological Process	mitochondrial tRNA 5'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17655	MRPP3; mitochondrial ribonuclease P protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.