Gene detail

Detailed information of RMX55959.1 in Pocillopora damicornis

Genomic Location: SczhEnG_979:64801...76316
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00021028

TGGCGCATGAAACAGACGAGAGAAATCTTTGcaattaatattatttccaAATGACCTTTCTAGCGCGTCACGCTTAATTGTGTGATATTATGACGCCCCTTTACAATGAATAGGACTTTAAGAGTTTCTCTAAGGAGCCAGTTTCTGGGCCATGCAAGGACAGCACTCCACAGAAGATGGCAGCATTCCTTACCACAGAAACCTGGTTCACAGttatataTTGCATTAAGACCAGGTATGACCATTAGACAGCTTGCTGCTGAGATGAGTTGTGATCCAGGTTCTCTAGCTGACATACTGGTTGAACTTGGCGAAGAATTGCCCAATGGTCTGCTCACAGTGCTTTCACCAGACCAAGCTGAGCTGTTGGTGATGGAACACAACATGACTCCTGTTCACCGAGAtctcaaaacagaaacaagGCCTCCTGTAGTGACAATTATGGGTCATGTTGACCATGGCAAAACCACTCTACTTGACACACTGAGAAGAACATCAGTAGTGGCCGGGGAGGCTGGAGGAATCACACAACATATTGGCGCTTTCTCAGTCAGCATTAAAGGAACAGACAAGACAATTACATTCATTGATACACCCGGCCATGCTGCATTTGAAACAATGAGGGCCAGGGGGGCTAATGTGACAGACATTGTTGTACTTGTTGTGGCAGCAGATGAAGGTGTGAAGCAGCAGACAGTAGAGTCCATAAGACATGCCACCAGAGCAAAAGTTCCAATAATTGTTGCACTCAATAAAATAGACAAGCCCAGAGTTAATGTGGAGCAAGTCAAAAAACAGCTTCTGCAATATGGAATTCAACTAGAGGAGTTTGGAGGGGACATCCAAGCTGTAGCAGTGTCTGCCTTAAAGGGAACCAATTTTGATGAACTGCTGGAGGCAATCCACACTCTTGCAGAGTTACAAGATCTAAAAGCCAAAGTAGATGGGCCAGTGGAAGCAATTGTCCTAGAGTCAGGCAAAGACAAAGGAAGGGGctcCATTGCAACCATTCTTGTGAATAGTGGAACACTGAGGATAGGTGATATTCTGCTTTGTAATCAAGCATTTGCAAAGGTACGTCTCATTCTTAATGACCATGGTCAAACTGTGACAGAGGCCATGCCCTCAACTCCAGTAGAAGTAGGGGGTTGGAGGAACACTCCTTCTGCAGGAGATGAGGTCATCCAAGTTGAAACAGAGGAAGAAGCTAGGGATGCTGTAGAGAAGAGAAAGGCAGTATTACGGCAAAGGAAACTACTTTCAGAAGATGTGCATAATGCCCTACTGGATGTAGAGCTGAGCTACAGAAAGGAACCAGCTCCCAAGCAGCCTAGCAGCGAATATGACTgtaaagacaaattaaatattatcattaaaGGTGATGTTGATGGTTCCTTAGAAGCAATCAGCGATGCtttaaaaacatacaaatCAAAGATGGTGAAGTTGACAGTTCTATCCAGCCAAGTTGGAACTGTTACTGAAAGTGACATCAAGCTTGCAGAGACTTTTCATGGTATAATTTTGGGCTTCAATGTGAAGATTACAAAACAGATGTTGTCTTTGGCTAGACAGCGTGGTGTGGATGTGAAACAGCACAGAGTAATTTACAAGCTTTTGGAAGATGTTAAGGCTGAACTAAACAAGAGAATCACTCCTATTCATGAAGAAAGCGTTACTGGTGAGGCAGCAGTTCTTAAAGTGTTTAAACTTACTGGCCGACGGAAGGCCACAGTAGCTGGTTGTCAGGTCAAGACTGGGACACTTGATCGCAAGAGTTTGTACAGAATAACAAGGAATAATGAAGTTGTATATGAAGgACGACTGGCCTCCATGAAGCATGGTGTTGATGATATAAGCCAAGCTAAAAGGGAAACAGAGTGTGGCTTGTCATTTGAGAAGTTCTTGGAAGTCCAAGAAGGAGATGTGGTTCAATGTTACACTGTGAATGTCATTAAACCAGAAATTGATTGGGATTGGGGTTTCTGAtataccacaaaaaaaagataatctCTTCATGTAAAATACTTATAAATTAATCTTGTCTTGGGCTTTTTAATATCAATGATAGGTGGACTTTACAATGTAATAGGTGGTTagcttcaaattttatcaaaaataatgcATCAAGGTTGTATATGATCAATGCGCTTAAGCTGTCTTCccatttgtaaaaaaaatggaaaacatttttgaactGTATCCATCAAGAGAAATAAAGCaagtaaactttgaaattattatttaactttatttgttCCCcctaaaaacaattttaataaaaaaattttgatcatggTGAAAATGGTACAGTTGTCATCTCTCATGTTTTTATCCAACACTAGTGCATTTCTGTTacctcaaattttaaaaataaaggtaaTACCCTCAGgttttttcatgataattattatctaGTGGTATTGCACATTATTTACCCCTttccaaatgttttgttacatGCAGAAATCATTAGGTCAACTTTTCACCTTAGTCAGAAAAGCTCTTTCTTGTCATAAAATCAAAAAGGTGGATGtgttgtgaaattttgtttttctttatgttttctGGGGTATTTAGGCAGGACCTTGATGTATGtac

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002679 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11987 all species →	IF-2	Translation-initiation factor 2	Domain	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015760 all species →	Family	Translation initiation factor IF- 2	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR036925 all species →	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR023115 all species →	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR000178 all species →	Family	Translation initiation factor IF-2, bacterial-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR044145 all species →	Domain	Translation initiation factor IF-2, domain II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381 all species →	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02519	infB, MTIF2; translation initiation factor IF-2	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.