Gene detail

Detailed information of RMX56335.1 in Pocillopora damicornis

Genomic Location: SczhEnG_862:267886...281584
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00004435

GTTTCGGTCAGTGAGAGTGTTATACGGAGATATGAATGTTTGCAATTTTGTAGTGTTTTTTCTGCTATCGTCGGCTGTACACTGCTTAGGAGATCCCAAAAGAGATGGAAAAAGCCCTCGACTGGTGTGTCATTTCTGTAGCAAGTCTAACAGCAGCCAAAGTGATTGTACATGGATCAACACAACTTGTGATGAGACAAGCAAATACTGTTACACAATGTGGATAAATGACTCTTTAAGTAAAGGAGGGGTACAACGCGCAGGGTGCTGGCAGCAAAATGCAAACTGTGAAGATTCATTGTGTTTGGGTGAGAAGACACATAATGGgaaaggttttttcttttgctgctGTAATGAAAATCTTTGTAATGGGAATTTCAGTTTACGCCCTGAGACAACAAGATCAACAGTAACTTCTGAACCAATAACTACAGGAGGAATAATACAATATACCAACAAACCTTCAAAACCTGACAGGCGTGGCCCCACATACACACTGTTGTATTTAGTGGCTCCAATTTTTGTAATAGCAGTTATCCTGATAATTGGGTTTTTTATGTATCGCCGCCACAAAACACCATTTCCGACCCGTATCCTGGAAGAAGAACTTCTCAACTCAATCCCTCCACCATCCCCAGAGCTGGGCTTCAGACCCATTCAGCTTGTGGAAGTCATTTCACAAGGAAAGTTTGGCACAGTATGGAAAGCGGATTATCTCGAAGATGTAGTTGCTGTTAAAGTTTTCCCAATGGCCCACCAGACTGCCTGGGTCTGTGAAAAAGATATCTTTACAACTTGCAActtgaaacatgaaaatattcttaaatttgttgCGGTAGAGAAGCACAACAATGGCTCATGCTCTGAGCTGTGGTTGATAACAGAGTATCACGAGCATGGATCTCTTGGCGACTATCTTAAGAGCCATGTAGTAACGTGGCCAGAGCTGTGTTCAATGGCAGGAAGTATGGCTAATGGCCTTGCATATCTGCATACAGAAGTATTAGAAAGTTCTTTCAAACCCTGCATAGCCCACAGagatttcaaaagtaaaaatgtgCTGGTCACAAAGGATCTAACCTGCTGTTTGTCTGATTTTGGACTGGCAATGAAGTTTGACTCTGGTGGGGATCCAGGGGAGACACATGGCCAGGTTGGAACAAGACGTTACATGGCACCAGAAGTACTTGAAGGAGCCATCAGCTTCACAAGGGAGTCATTTTTGTACATTGATATGTATGCCTTTGCTCTGGTTCTTTGGGAGTTGATGTCCAGATGTACTGCTGCTGATGgtCCTGTTGATGAATACAAGTTGCcatttgaagaagaaatagGATCACATCCTTCCTTAGAGGACATGCAACAAGTTGTAGTACAGCAAAAGATCAGACCTAAATTCCGACCAGACTGGTTTGTCCACTCGAATATGGCGAGCCTTCTTCAAACTATTGAAGAATGTTGGGATCAAGATGCAGAGGCTAGGTTAACAGCTCAGTGTGTCGCAGAAAGGTTATCTCAATTCAACACAAATTCAAGCTTCGATTTGGCGCATTCTCCCACTGTTACAACAGTAGTTAACAACACCAACATTACTCCATCTTCAAAAGAGTCATCAATATAaacaagagtaaaaaaataatgcaatgtGAAGCATCCTTAGGGAGCAGCGAGTCAGTAAGGTGAGTATCAGGAATACATTCACCTGTAAAAGAGTCAGGAAACTCAGAGTTTTAAACACTGTGGATCAGAGTTTGTGTACAAGGCAGCAAATGGATACAATACagtgaacaaacaaaaatcaagcCAAAGATCTTCGCCATTCAGCCAGCAAATGGGTACTGTGTGCTGTTCGTTGTTTGATCAATTTGTCCTCTTCAACATATTTTAAGACCATCACGACATATTTAGTAATCAGTGGTTAACACccctattaattttttaagtaagcATTTTGGTGGTACTGGtacattttaattcaaacaagaaCACGGCATCAACACTAAAACTACTGGTAACTAGAACTTTAGGTAATTAAGAAAGCTGAACAAAGTTATTGggctttatttctttttctacttcTCCTTGCAAACAGGTTCTTATTTTAAAGACTGGTGTACCATACTTTTAAACTGTTATTTACTAGCCGTATGTagatacatttattttattaactgaAGGTGCAATATTTATCCATCATTGATTGTGACGATCTCACTGATCTTTATCCTAGTGATGTGAATTTGCTATGATATCAATATTAAGGGAAAGGGAAAACTTAAATTGGTCATTTTGTTACCAGGATAATTACCTGGTATGTTGAAGTTTGTTGATTATGCTATTTATACAGGGTTGTCAAAAGATTCCTAGCAATTGGTGCCTTTCAACGCCTACTGAAAAGCATGCCGGCTGTCGTGAATGCTTGTGGCACAAGTTTCAGCATTGAAGCATGACCTTGTGTGGCCTCTTTTGAATCCCAAACTCATTactcaaattcttttttgacaaTCCTGTTACATGAGTGTTACATTAGTGGATGGAGTATTCTACAGATGTGTCCTCTCCGTTCAGTTGAACCATTTCCTATTTATCCAAAATCAGTAATAGCAGGTTGCGCTTGATACTAGAgcagtaattttcaaaatggatgcagagaaattaattttgttggtGTCCGTGAAGAGGAAGCCTCTGACTAGAGAGAAACTCTATTGTTCTGATAATCCCCCAAGTACCTCTAGTAACACAATTAGTCTCCTCAGGCTCGGTTATTATAGTCAATTAGTCGCCATGGTCTTGTCTGAGGGATTAATTTGACAATATTTGTCTCTTCTGGGGCAGAGAATTGGCCTATGGCCATCTTTGAATATTTGTGAATCGTCTCAAGTGTGTGATAAATTAAGTGAAAGCTAACATGTGATTAGGTACTTAATCTGCATGTTGTCTTAAAGAAGATTGAGAAAGGAAACTTTACCATTCCGTATCTTCATGTCCATgtaaaaccattttttcttgttttcagtaTCCTACAGAGAAAAGTACGTTGATAGATGATCTGAATtggacaattttaaaattctgttcTCCTGATCCTTCAGTCACTTGGACAGTTTCCCAGATACTTCAAAGCaatgataaattattactGAACTATTAATTATCAACTAAGCATTCATTTTGCGTAAAATAATCCAGCGTGTTAATCAATacatctcaaaataaaatacttttcGCAATATCTCCATGTTCAAACCCAAATGTGCTGGCATAATAATTAATTCCTTTGCTAAAAGATTGaccattttatcttttaaggGGGTGGGGAAGGGGATGAAAGTATCATCAAAAAATTACTCtcctggaaaagaaaatcaaagaaaacatttgtctcacaaaactgctaaaaacagcaacatttattataattttgcCCCTCCATAACTAAAATGGTTCAAAGTCCTCAATGTCTAATATATTGTCcattgtcaaagaaaacaattgtgaCTGTATCTATATCAAGGTAATATTCTCTAGTTATTTGTTACACCaaggctgaaaaaatttaaatgtgaaCGGGAAAGAATATGGTCTTTCCTATTTCAGAGATATGTACCCAATAATAATCAAAGTTGTACAGAAAAGACAACAATCTCTTGTTactgtaaatagttttaagtatttttactACGCATTTATCATATTGTTGTTATATTCTACAATTCGATGTCTTACGATTCGCATTTATCGCGGTCTGTAAATAGAGTTCTTCTGATACAGCTCGGTAAGAGCTCCTGAATTAACGAAGCTTTTATCCAGGTCCCGCACTTGCCCAAGGCAAGAGAGGGCCCTGGGTACGGCAATGAATAAAACCATATcatcagtttgaaaataagaaaaggtTGAACTATTAAACTTGGAAACGTCTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR017194 all species →	Family	Transforming growth factor-beta receptor, type II	Interproscan
IPR000333 all species →	Family	Ser/Thr protein kinase, TGFB receptor	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23255 all species →	TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0007178 all species →	Biological Process	cell surface receptor protein serine/threonine kinase signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004675 all species →	Molecular Function	transmembrane receptor protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0017002 all species →	Molecular Function	activin receptor activity	Interproscan
GO:0032924 all species →	Biological Process	activin receptor signaling pathway	Interproscan
GO:0048179 all species →	Cellular Component	activin receptor complex	Interproscan
GO:0048185 all species →	Molecular Function	activin binding	Interproscan
GO:0071363 all species →	Biological Process	cellular response to growth factor stimulus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13596	ACVR2B; activin receptor type-2B	EC:2.7.11.30	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.