Gene detail

Detailed information of RMX56370.1 in Pocillopora damicornis

Genomic Location: SczhEnG_862:678926...683135
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00004479

ATGGAGCAAGGGCAGAGTGAAGAATCGCTAATAGAATCCGGCGAGAGATCGGATGTCGGGCGACGGAGGAATACGCCAGCCGGAAGGCAAGCTACCGCGAAGTGTAGTAAAATTTCGCCCCTACATCTTGTTTGTATCAGTCATTTGTTTTCCGCTTGGGGAGATCGCATGTGGCATTTTGCTATTGGACTGTATCTAGTTGAACTCACTCCAGGATCATTGCGCTTAACAGCAATCTATCAACTGATCAGTACCTTGTCAATTATCATATTTGGACCTTTAGTTGGAGATTGGGTGGATGGAACTCCTCGACTGAAGGTGGCACAAATTTCATTGATAATTCAAAATGTTGCGGTGATAATCTGTGGAGTTTTGCTGTTGATTATGTTAAAATTAGAGGAGCACATCCAACATCCATACACCATGTTGCTGGAAGCCAACATTATCATCATTGGCTCTGTAGCTGACTTGTCTAGTGTTGGCACAAAAATTGCTGTAGAGAAGGACTGGGTGGTAGTGATTGCTGGCTCAGATAAATCACTACTGGCAAGTACAAATGCATTGATGAGAAGAATTGATCTTTGTTGCAAGATCCTTGCTCCGATCGTAGTTGGTCAGGTGATGACTTACATCTCTAAAATGGCAGGTGTGTTGTTTTTAGCGGGTTGGAATGTTGTATCGGTTTTTGGAGAGTACTATCTTCTCTGGACAGTTTTCAAAGCCGTGGCTGCCCTGTCTCACAAGGTCATAGACACAACAAGACACAACTCTAACACTGAAGACAACTCTTCCGTGGATATGTCTGCTGATGAACCTCACGGATCTAATGAGCGCTTGGAAAGGATGGAAAACGAAGACCAAGAAAGGGGCCAGAATGGCGCTGAGGTTTTGGTCCCAGCTGTTACTGTCAGACCCGTTCAAAGACAACCCAAGCCAAGTGTCTATGCACGATTTAAGAAAAGGATCCTGACCTTTGAAATAGGATGGCACATTTATTTTAGACAGAGTGTAGCCCGACCTGGGCTTGCCCTGGCTTCGTTGTATTTCACTGTGATTTCGTTTGGCGCCATAACAACTGGTTACGCTTACACGCAGTGTTTGTCTGAGTCAGTTCTGAGTCTGATACGAGGCATTGGTTCGTTGTTTGGTGTCTTTGCTACATTTGTTTTTCCCCGATTGAGAAATGCTGTTGGTGTTGTTCGCTGCGGGCTTTTCTCCATGTCTCTTCAGTTTTCTTGCCTTCTTTTGTGTGTCGCTGCTGTCTTTGCTCCTGGTTCGCCATTTTTCTTGTTACCGAGAAATTCAGGGCAACCTGTGCTGCCCCAGTGTAAGGCACCTCAGCAGACAACTCCCACACCAACTCTCTCTCCCAGTTGCATAGATGAAGGGCCCAGGAATTCCTCTATAAACGTTCATCCTTCAAATTTGCAGTTTATGAGAAGAGCTGTAAACTATAGTAATAATGCAGTAACGACGGCAAGAATGTCCTTACCAAGTGTCACAGTGCCGTCCGTTGTTAATCGGGTGAATGGATCAAAAACACAAGCCATACCATCCACAACAGCCATTTTGCCATCCAAGACCACACCCAGTGTGGTGCCTTCCAATTCAGTCGTCTCTCCTTCTACTTCTTCTCCTTCAAACCGCAACTGTAGTTTGAAGACAACAGCCTCTATGCCGCAGGCCGTAAGCAACAGTTTTTCATATGTCTCCATCAGCTTGCTACTTGCAGGGATCGTCTCATCCCGCCTTGGATTATGGTTGTCTGATTTAACCATCACCCAACTCACCCAAGAGGCAGTACCAGAACAAGAGAGAGGAATTGTGGGCGGGATGCAAAACTCTTTCAACTCAATTTTAAGCCTTCTCATGTTCTGCTTAGTTATAGCTCTTCCCAAGCCTGAGACGTTCGGTTTGTTGGCACTGATGTCTGTGGGCGCAGTTGGAACAGGCGGCTTACTGTACGCTTCTTTCGCGTACAAGATTCGTGGTCATTTGTTTCATTTTGAGAAAGCCCGTAAATTCTGCGGCGGGGCCGATGCTCGTAGGGAGCCGGTACCGATGCTGATCTCAAATGATGACCTCGATCTTGAGGATGACGAAGAGGAGGCCATGATCAGAGGAGTGTTAAGCACTAGGAACGAAAACTTTAAGTATTAG

Transcript

rna-pdam_00004479

ATGGAGCAAGGGCAGAGTGAAGAATCGCTAATAGAATCCGGCGAGAGATCGGATGTCGGGCGACGGAGGAATACGCCAGCCGGAAGGCAAGCTACCGCGAAGTGTAGTAAAATTTCGCCCCTACATCTTGTTTGTATCAGTCATTTGTTTTCCGCTTGGGGAGATCGCATGTGGCATTTTGCTATTGGACTGTATCTAGTTGAACTCACTCCAGGATCATTGCGCTTAACAGCAATCTATCAACTGATCAGTACCTTGTCAATTATCATATTTGGACCTTTAGTTGGAGATTGGGTGGATGGAACTCCTCGACTGAAGGtggcACAAATTTCATTGATAATTCAAAATGTTGCGGTGATAATCTGTGGAGTTTTGCTGTTGATTATGTTAAAATTAGAGGAGCACATCCAACATCCATACACCATGTTGCTGGAAGCCAACATTATCATCATTGGCTCTGTAGCTGACTTGTCTAGTGTTGGCACAAAAATTGCTGTAGAGAAGGACTGGGTGGTAGTGATTGCTGGCTCAGATAAATCACTACTGGCAAgtacaAATGCATTGATGAGAAGAATTGATCTTTGTTGCAAGATCCTTGCTCCGATCGTAGTTGGTCAGGTGATGACTTACATCTCTAAAATGGCAGGTGTGTTGTTTTTAGCGGGTTGGAATGTTGTATCGGTTTTTGGAGAGTACTATCTTCTCTGGACAGTTTTCAAAGCCGTGGCTGCCCTGTCTCACAAGGTCATAGACACAACAAGACACAACTCTAACACTGAAGACAACTCTTCCGTGGATATGTCTGCTGATGAACCTCACGGATCTAATGAGCGCTTGGAAAGGATGGAAAACGAAGACCAAGAAAGGGGCCAGAATGGCGCTGAGGTTTTGGTCCCAGCTGTTACTGTCAGACCCGTTCAAAGACAACCCAAGCCAAGTGTCTATGCACGATTTAAGAAAAGGATCCTGACCTTTGAAATAGGATGGCACATTTATTTTAGACAGAGTGTAGCCCGACCTGGGCTTGCCCTGGCTTCGTTGTATTTCACTGTGATTTCGTTTGGCGCCATAACAACTGGTTACGCTTACACGCAGTGTTTGTCTGAGTCAGTTCTGAGTCTGATACGAGGCATTGGTTCGTTGTTTGGTGTCTTTGCTACATTTGTTTTTCCCCGATTGAGAAATGCTGTTGGTGTTGTTCGCTGCGGGCTTTTCTCCATGTCTCTTCAGTTTTCTTGCCTTCTTTTGTGTGTCGCTGCTGTCTTTGCTCCTGGTTCgccatttttcttgttaccGAGAAATTCAGGGCAACCTGTGCTGCCCCAGTGTAAGGCACCTCAGCAGACAACTCCCACACCAACTCTCTCTCCCAGTTGCATAGATGAAGGGCCCAGGAATTCCTCTATAAACGTTCATCCTTCAAATTTGCAGTTTATGAGAAGAGCTGTAAACTATAGTAATAATGCAGTAACGACGGCAAGAATGTCCTTACCAAGTGTCACAGTGCCGTCCGTTGTTAATCGGGTGAATGGATCAAAAACACAAGCCATACCATCCACAACAGCCATTTTGCCATCCAAGACCACACCCAGTGTGGTGCCTTCCAATTCAGTCGTCTCTCCTTCTACTTCTTCTCCTTCAAACCGCAACTGTAGTTTGAAGACAACAGCCTCTATGCCGCAGGCCGTAAGCAACAGTTTTTCATATGTCTCCATCAGCTTGCTACTTGCAGGGATCGTCTCATCCCGCCTTGGATTATGGTTGTCTGATTTAACCATCACCCAACTCACCCAAGAGGCAGTACCAGAACAAGAGAGAGGAATTGTGGGCGGGATGCAAAACTCTTTCAACTCAATTTTAAGCCTTCTCATGTTCTGCTTAGTTATAGCTCTTCCCAAGCCTGAGACGTTCGGTTTGTTGGCACTGATGTCTGTGGGCGCAGTTGGAACAGGCGGCTTACTGTACGCTTCTTTCGCGTACAAGATTCGTGgtcatttgtttcattttgagaaAGCCCGTAAATTCTGCGGCGGGGCCGATGCTCGTAGGGAGCCGGTACCGATGCTGATCTCAAATGATGACCTCGATCTTGAGGATGACGAAGAGGAGGCCATGATCAGAGGAGTGTTAAGCACTAGGAACGAAAACTTTAAGTATTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06963 all species →	FPN1	Ferroportin1 (FPN1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009716 all species →	Family	Ferroportin-1	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11660 all species →	SOLUTE CARRIER FAMILY 40 MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005381 all species →	Molecular Function	iron ion transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034755 all species →	Biological Process	iron ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14685	SLC40A1, FPN1; solute carrier family 40 (iron-regulated transporter), member 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.