Gene detail

Detailed information of RMX56475.1 in Pocillopora damicornis

Genomic Location: SczhEnG_841:107086...123485
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00014930

AGGCTGAGCCGGCTGAGATGCGGTCAGTTGAGTTCTGGGTTTGGCTATGCGTTGGAGGCAAGCAAAGTTAGACATTGTATGAGATACTGATGGCGGACTTTCGCTGCCGGTGAAGACTTCACGTTTCATTAAGATCGTTCAAACAACCGCAATGTCCTCTAAGAGTACAGATTCGAGGCAGAGgtattacaaaaacaaagacaaagatcAATCGgcaCTAAGACAAAGGAGGAATGAAGTCACAATAGAGCTAAGAAAGGCCAAAAGAGATGACTGTGttcaaaagaagagaaatgtCCCACAGGATATTGTGGATGATAAAGAGGATCACCTACAGGGAAAGAGTCTGCAGAGTATTGTTGTGAATGCAAGTAGTCAAGACCCCAAAGAGCAACTTGGTGCTGTACAAGCAGCAAGGAAACTACTTTCTAAAGATCGCAATCCTCCCATTGATGAACTGATAGAGTCTGGCATTCTCCCAGTTCTTGTAAAATGCCTTGAAAGAGATGACAACCCTTCTCTTCAGTTTGAAGCTGCTTGGGCTTTAACCAACATAGCATCAGGTACATCAGAACAAACAAAGGCTGTAGTGAAAGCTGATGCTGTTAAGTACTTCATGAAGTTACTTGGTTCTCCACATCAGAATGTTTGTGAGCAAGCAGTTTGGGCACTAGGGAACATTATTGgtgaTGGTCCCAATTTAAGAGATTTTGTCATTAACCATGGAGTAGTGGCTCCACTGCTGAAGTTTGTTAACCCAAATGTTCctaTCAGTTTCTTGAGGAATGTGACATGGGTGATTGTTAATCTGTGTAGAAACAAAGAACCACCACCCCCAATGGAAACAATTCAAGAGGTTCTTCCTGCACTAGCTCTCCTCATTCATCACCCAGATCTAAATATCTTAGTTGACACAGTCTGGGCATTGTCTTATCTCACAGATGGCGGTAATCACCAAATTCAGGAAGTTATTGATAATGGAGTTGTTCCATCCCTTATACCCCTATTGAGCCATGGTGAAATAAAACTACAGACTGCAGCATTACGAGCAGTGGGAAACATTGTCACTGGGACCGATGAACAGACTCAAGTTGTCCTAAACCATGACGCCCTGAGCCACTTCCCAGCGTTACTTAATCACCACAAggagaaagtaaaaaagGAAATTATTAATGCAGGGCTTGTACCACTGATTATTCAAACTTTGGAAACGggCGAATTTCTGACGCAGAAAGAGGCGGCATGGGCGATTAGTAATTTTACAGTGAGCGGCAACCCTCAACAGGTAGCAGTCCTAGTAAACTGTGGTGCGATTCCTCCATTCTGCAAGTTGTTGGATTGCATGGATACCCAGGTCGTCCAGATTGTGTTGGATGGTTTAAATAATATCTTAAAGATGGCAGGGGACAGGTCTGATGCTATCGCAACCATTATAGAAGAAGCTGGAGGTTTGGATAAGATTGAATTCCTCCAGCAACacgaaaatgaagaaatctaCAAACTCGCTTTTGGAATAATAGATCAGTACTTTTCTAATGAGGGTGACAACGGTGACGAAGATTTAGCTCCAACAGAAGTGGATGGCCAGTTCGAGTTTCAAGCTAAAGATAATCTTCCTCCCGGTGGCTTCAAATTCTGCTAGGCGGCGATTTCCAACCTTTTACTCGAAATCTTCCCAAAGAATGAAGTCGTGGGGGCGTGCGTGGAGGCATGCGTGCGTGTGAGCGAGCGTGCGAGACGACGCGCGAGAGTGCGAGCGAGAAAACGCGCGAGAGTGCGAGAGAACAAATCATGACAGAGAGAGATCACTTTCGAAATAAGAGAATGAACGGAGAGGGCTTGTGAGGGAGTGCGTGAAATATGGAATTGTCTTCTGCAGTAACTCTGTCGCCTAATCACAAGCGAGGAGACCGTTTCATCAAAGTAATTTAATTAGAAGAATTTCATCTTGTCAGCATATGGCGGTAATTACTGGCCGCCACCGCTTGACTTTCCCACCGGGTCCAAGCAACAGGATGATGCCCCATTGGAATGTGTTGGAATCATAGGCGGGTGATATTACTCGTACTGCCTTGCTAATAGTAAAAGGAGGCAGAGTAAATAAGGCTAAccagaggatttttttaaagaattacaTCCATATGTATTTAGTGCGAGGATCAAGAGTCCCACGCTAACAAGTGAGAAGAGAAGAAGTGTTAAGAAAAGATTCATCCTGTCTAGGATtagtttctttcttgtttagCCATGGAAGGAACAAACTGAATGTTACGGTGGACAATCATTTTGCCcgaacttttaaaatttttcgtttgatttgttttgtatagATTTGGAGATGCCAAAATGCTATTATGTTTAACCACcgttgttttgtaattttgtgcGGTTTTAGAGGAagaaattttctcctttccttTCTGTCTTTTATCTCATTCTTATGATAAAATTACTGGAATATGTTTTGTAATTCTACGAAAGATGGATCATTGTATAGTACCGAATTTTATTagtaaattttaccatttttccCACA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF16186 all species →	Arm_3	Atypical Arm repeat	Repeat	Interproscan
PF01749 all species →	IBB	Importin beta binding domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR032413 all species →	Repeat	Atypical Arm repeat	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR002652 all species →	Domain	Importin-alpha, importin-beta-binding domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR024931 all species →	Family	Importin subunit alpha	Interproscan
IPR036975 all species →	Homologous_superfamily	Importin-alpha, importin-beta-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23316 all species →	IMPORTIN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX56475.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.