Gene detail

Detailed information of RMX56480.1 in Pocillopora damicornis

Genomic Location: SczhEnG_841:132936...139826
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00014933

CAACCACAGAGGAGCTAGCAACAGATAACAGCAAAGCAGCACAGCACAGTACACCCAATGCTACTCCCCTCCCTCCCTACCGTAGCGAGGTTACCTTGCTTTAAGATGGCGGACAACGAAGGTTCCATTTGAGGaagataataattttgtttcgtttgtttaAACTCAGTCAGCCTAGTTTCAGCTTGAATTATGGATGAAATTCTTTCTGAAGGAGACGCAAAGCGTTTTGAGGACAAATATAATGCTGAAGTTGAAAGAGGACAGGTTTCTTCTGATACCCAGTTCAGTTATGCTTGGTGCTTGATAAAAAGCAGCAACaagagtgaaattttaaaaggagtTCTTCTCCTGCAAGGTGAAAATTACTGGAGACGAGTGGATGCTATTGACTTGGTCACACCAGCACAATGCCTCATGATAGGACATATGAAGAACCCAGGATTATGTCATAGTGGAACTGATCAAAGAGATTacctttattttattgcagaAGGATATTACAAATTGAATGAATACAAGTCAGCCCTCAGATACACAAACAGATTACTACAAATAGAACCTGAAAACCGACAGGGGCTTGAGTTGCATGAAAAAATCACtggtcaaatgaaaaaagATGGCTTGATTGGACTTGGCATCCTGGGAGGTACAGCTCTGGTTATGGGCGGAGCAGCAGCCTTGGTTGGGATGGTATTTGCAAGCCGCAAATGAGCAAAacttaaagttaaattaacATTAATGCAGACAAATATTATTGAGCAAATAGGTTAATGAGTAGTATTATCACTATGTTTGGTATGGTGGCCCATTTTGTAgatttttgtataattttagcCTTGATTAAGGAACAGTAAAAGCATAAGTTTTCGATTTGGAACAAAATACCTTTTACATGTTCAACAAATGGACAAAATTGTGGAGGAAACAACCCATAATTGGAGGGTTGGGCATTATCATACAGTGATGTGTCAGTTGACTTTCCATCTGCTGCCAcataagtgaaaaaataacatataAATTGCTCAGATGATGAAATTTGCTTAGTCGAGAGtagaaagacaattttaaactTGTGATTGTGCTTGTGTGATTGAAAGACTAACAAGTGGTTAAACTAACAACTTGATCATCTAAATGTTTGTGAACCAACAAGAGAATCTCAGAAAAATGTTATATGCCTTTTAATAAGAGCTGGAAGCTGAATATTCAGACCCAAATTACATTAGTTATTGTTCCTCtgatttttatgttttatttttgttattacttttttgattattcattattcattttaaattctggAGAAAGGGATCAACAAGTCAACAAGCCTGGATTCTGGTTCAACTGATGTAAAAGTACTTCTTGACTTTGCCCATGAGCAACCAATGAGAGAAATAGATTATAGAGtcagtttattattattattactattagtCCAAAGAGGGTGCCATTCCATAAAAAGCTAATTGGACAACTCTTACACCAAACTCCTgcagaatttcattttttataacatgatccccaaagaaaactgactAATTCCAAATTAACAGAATGAGTTACCTTTAAACCTACAGAGTAATTGTTGAGCAAAAATGACAAACCTTCAGCCAAGTCatggccaaaaaaaagaaaagagagaaacttGTAACCCTCAGgttgaacaaacaaacaacagcttGTGTGgaaattatgaattttcttCATGCCGTATTATTATAGACGGgatcaaagaaatttgtggATGAAGAGTcagaaaagtaaattaaattttgtaaaagaagTGTACCCAGGTAACAGCTGatttaagaaagaaaccaTCCTTGAAGGGAATGGCATTATGAGACCTTTCCACGCTTAAGGTTCTATTCGTGTTATCCACCAAGCCTTAAAGCTTTATCAGAGGAAAACTCTTGAGGCACCTCACAACCAATTAAAGcaatataaataatttctcattatGGCTGAAACAGAGAGGATAACCAGCTATCACTTGGGTGAAACACCTTGCAGCAATGAAATTGCTTAATGAGAGATGCATCactaaaacacaaaaagtttAAACTGCTAACACAGCGTGGCTAGCCCTGAAGAACTTGGTAATGGGGAAATGGAACGTTATGGAGACCTAACTTGGAATCTCCCTTACATAATGTGTTACACATATTAGTAAGGGTTGAGTAATAAGATATCTTAAAACCGATAGGATAATCAAAGAGCAAAGATGCATCATTTCGTATCCAAAATATGGATGTAGTCACACCCCTTTAAAGCTAAGTTGAGTAACAACTTGGAATTGAGctttttgacaaaatgtttCGGGGAGTAAACAAACAATCTTCTGTTTTACATTATTCCAGAGTGATAATCTagtttaaatttcaactttttctccaaattaagaaaactttcGGTATCGTTAAACGAAagtggtttgtttttgtcgttgtttcCATTGAAAAAGCTCTAGAAAGGTAGATACGTTGATAACTAAACATTACAGCTACGGACTGAATCGCTTaacaaaatactgaaaatgtCTATAGAGGTACTTCTTAAAGTATATATAACAGACGTATAGACTATTAGAAAAAGGATTGAtagcaaaaactgaaaagccAGGAATATCTACAATCTATACGCTAAACTCGTAAAACACTTTTCTTGCAAAGTTCAGTCTTGTTCAGTCAGGCTCCTACTTATTAACCCCCATGAAGAGTAGATGCTACCCTGAGCGTGGAAACAGGTCGTAGCATCAGTCCCAGGGGAGAAACCAGTCACCGGCAACAGCAAACA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14853 all species →	Fis1_TPR_C	Fis1 C-terminal tetratricopeptide repeat	Repeat	Interproscan
PF14852 all species →	Fis1_TPR_N	Fis1 N-terminal tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028061 all species →	Repeat	Fis1, C-terminal tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR033745 all species →	Domain	Mitochondria fission protein Fis1, cytosolic domain	Interproscan
IPR016543 all species →	Family	Mitochondria fission 1 protein	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR028058 all species →	Repeat	Fis1, N-terminal tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13247 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000266 all species →	Biological Process	mitochondrial fission	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005779 all species →	Cellular Component	obsolete integral component of peroxisomal membrane	Interproscan
GO:0016559 all species →	Biological Process	peroxisome fission	Interproscan
GO:0031307 all species →	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan
GO:0043653 all species →	Biological Process	mitochondrial fragmentation involved in apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX56480.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.