Gene detail

Detailed information of RMX56683.1 in Pocillopora damicornis

Genomic Location: SczhEnG_828:845639...858319
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00002430

ATGGTGGAAACAACACTTATCTTCTCCGCTGCTAAAACTTCATTTGATCCTCAAGTGCAAGGATGTTTGATCATCGGGAAACCGCGAAACCTTCAGACTGTTACATTTGACAATTTAGCGGAAAAACTTTCGCCACGAGTTGACGCTGCGACATTTAACCTTGTGCTTCACACCATGGCTGGTTCAGATGCTTGTCCAGTTTGGTTAAATCAAGTGGTTATTGGTGCTCTTCCTAATACAGCAAGTCGTCATAACTCCTCAGCCAGTCCTCACTTCCTTAACAAGCTTGTCTGCAGCCATCTTCCTGGAGGGGATGCTTGTATTGTGGTTGTCTGTGAAAGACATGATGCTTTTGCTTCAGCTTGTGCTATTTCAAGGGCTTTCCCAACTTATTCAAGAAAGACCTCTAAAGCTGCAAAATTGTTATCAAGAACTGTAACTGTAGAGTTCATTCTTGTTGGAAACAATGATTCTCCAATCTCAAGTGAAGATGCTGCTTGTATGAATGTAGTTGCAGACAGCATCCGTCTGAGTGCTCGCCTGGTAGATATGCCATGTGGAGATTTGCACACCACTGCATTTGTTCAGGAAATTACTAAAGTTGGTGAAGAATTAGGTATTGTTCCTGTTGTGATCAAAGGAGAAGAACTTGATCAAAAAGGTTTTGGAGACTGTGGAGGGGCAGCTGGTATTCTAGGAGCTTTTAGAGCAGCAGTAAAACAGGGCTTTACTGAGAATCTTCATGCTGTGTTCTGCATGGCAGAAAATGCTGTTGGTCCTGACGCTACTAGACCTGATGACATTTTGACGTTATACTCAGGAAAAACTGTCGAGGTTAACAATACCGATGCTGAAGGCCGCTTAGTTCTTGGAGATGGGGTGGCGTATGCCAAGAAGGATCTCCATGCCGACGTTGTCCTTGACATGGCCACCTTGACTGGTGCCCAGGGTATTGCAACGGGACGCTACCACGCGTCACTTTTGACCAACAAAGAGGTGTGGGAACCAGCTTGTGCTGCGGCGGGAAGAGCAAGTGGGGACCTGGTTtttccCATTCCATATTGCCCAGAACTTCAtttctcagaattttcaaGTGCATTAGCAGATATGAAAAATTCAGTACAAAATCGTGATAATGCTCAAGTGTCCTGTGCTGGCCTTTTCATTGGTTCCCACTTAGGATTTGATTTCCCTGGAAGCTGGTTACATATTGATATGGCTGCTCCAGCTCATATGGCCAGTCAACAAGCAGTATCCATCCATCCCTCAAGATGTTTTCATCGGGCAATACCCGTCTTGTCAGATAAGCTTTTCGTGCACAGGGATACTCCAGAAAATAATCCAGACATTCCATTTGAACTGACTGCTAAAAACCTGGAGaGAGCGAAAACAATCATAAACAACTACCCTGATGGACACAAAGCAGCTGCTGTCATACCTGTACTGGATCTGGCACAAAGACAACATGgTTGGCTACCAATTTCTGCAATGAATTATGTTGCTGATTTATTGGAAATGCCAAGAATGAGAGTTTATGAAGTGGCAACATTCTACACCATGTATAACAGGGAACCTGttggaaaatatcacattcAAGTCTGCACCACAACACCTTGTCAACTGAGAGACTCAGACATGGTAGTAGAAGTTATTTCCAAGAAATTAGgTATCAAGATTGGCGAATCAACAAAAGATGGTTTGTTTACCATGAGTTCAGTAGAATGCCTTGGAGCTTGTGTGAATGCCCCAATGATGCAGATTAACGACAACTACTATGAGGACCTCGCAGCCAACGACGTAGAAGAAATCATTGACGATCTGATTGCTGGAAAAACACCAAAAGCGGGACCCAGGAGTGGTCGATTTTGTTGTGAGCCCGCCGGAGGACTGACGTCATTAACAGAGCCTCCCAAAGGGCCAGGCTTTGGTGTGCGATCTGACCTTTAAACCGTTTGCTCACTGATAATACTGTTATTGAACCttgtaaaatagaaattaaactttgtgTAATCTTGTTTGAGATGCGATaaataaatttggtttttaacttg

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00883 all species →	Peptidase_M17	Cytosol aminopeptidase family, catalytic domain	Domain	Interproscan
PF01257 all species →	2Fe-2S_thioredx	Thioredoxin-like [2Fe-2S] ferredoxin	Family	Interproscan
PF18295 all species →	Pdase_M17_N2	M17 aminopeptidase N-terminal domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000819 all species →	Domain	Peptidase M17, leucyl aminopeptidase, C-terminal	Interproscan
IPR011356 all species →	Family	Peptidase M17, leucine aminopeptidase/peptidase B	Interproscan
IPR002023 all species →	Family	NADH-quinone oxidoreductase subunit E-like	Interproscan
IPR042128 all species →	Domain	NuoE domain	Interproscan
IPR041921 all species →	Homologous_superfamily	NADH-quinone oxidoreductase subunit E, N-terminal	Interproscan
IPR041417 all species →	Domain	Probable aminopeptidase NPEPL1, N-terminal	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11963 all species →	LEUCINE AMINOPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019538 all species →	Biological Process	protein metabolic process	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX56683.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.