Gene detail

Detailed information of RMX56927.1 in Pocillopora damicornis

Genomic Location: SczhEnG_764:258480...272777
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00011074

ATGGCGATCACAGAAATAGGGAAAGTGTTCGTGTTTAAAATGGCAATAACACTTTGTAATCTCATTCTAATACATTGCAGAATTATAGAAGTCAATCTCGGAGGCACTTGGATTATTTCAAATGCAAATAACAGCATTTCTGTGCCCGGAACTGTTCCTGGAAATGTTCACACAGCTTTGTACAGGAATGGAAATATTCCGGATCCGTACTTCCGGTTTAATGATGTCAACTATCGCTGGATAGCGTATGACAATTGGGTGTACACAAGGACCTTGGAAGTTTCTGAAGATGTCATATCAAAAGGAAACATTTTGTTGGTTTTTGAGGGCCTGGATACAGTTGCTACAGTTCTGGTGAATAATGTTGAAGTTGGCCACTCAACAAACATGTTTCACAGATACATCTTTAGTGTTAAGGGGGTGCTAAAAACTGGAATGAACAAGATTGAGGTGCGCTTCACTTCTGCAGTGCTCTATGCCAAAGAGCAGGCTAAAAAGTTTCCATATCGTGTACCCCCTGAATGTCCAGTCCCAGTTCAGCGTGGTGAGTGCCATGGAAATTTCATCAGAAAAGAACAATGTTCATTTAGTTGGGACTGGGGACCAGCCTTTGTTCCTCAAGGGATTTGGCGAAATGTTTCTCTGCAAGCCTACAACTCAGCTGCTATAAGGGACATCACAGTAACACCTACAAAAGGTTCAGCTAACATCACATGGCAGTTATCTGTGGCACTTTTTGTAGATTCAGCTGAAGATGGTGTGACAGGTACAATAGTGCTCAGTCTTCCTCAGCTGTCACGCTCTCAGAAGCTTGTCATCAAACTGTCACAAGGTATCCAAAAAATTTCTTTCCCAGAGATGTTGTTTACAGAAAAAGATAACATTAGGCCATGGTGGCCTCAAGGATATGGCAAACCAAATCTGTACACAGTTAAGGTTGTGTTTTTGAGCTCATCTCGTGATGAACAGTCAAGCATCAATCGTAACATCGGTTTCAGGACAGTAAAACTCAGACAGGAACGAATTGAGTGTGCTCCAGGTTTCAATGGATTCACTGGCAGAAGTGCTCTGTCTGTTTCAGGACGGGGATTTCACTTTGAGATCAACGATTTGCCAATATTTCTGAAGGGAGCTAACTGGATTCCTGCAGATGCCTTTGAGGACCGTGTGACGAGTTCAGACCTTTGGAATCTTCTCAAGTCAGCAGTTGAGGCAAACATGAATGTGGTGAGAAACTGGGGAGGAGGAATCTATCAACATGATGAATTTTACGACATAGCGGACGAGTTAGGGTTACTTGTTTGGGAAGAATTCATGTTTGCCTGTGCCATGTACCCGGTTGATGTAGAATTCTTGAACTCAGTCAAGGAAGAAGTACAATATCAGAAACTTTGTGTGGACAGGTACGTCGGCTTCATCATCATCCGTCCATCATACTGTGGAGTGGTAACAATGAAAATGAAGAAGCTCTGGCGACCAACTGGTATAACACCAGTTCTTCGTTCGCAAGATACTACAAGGATTATAAGAAGGAATCAAGTATCACCTACTCCAATTGAGGGAGGGACGCTCGAAAGTGAAGACAAGAGCCGACCATTTCTCTCATCGTCTCCTTCGAATGGAGTAGATACTGAGAAAGAAGGATGGGTGGCAAAAAATCCAAATAGCTCCTATTGGGGAGATGCGCACTTCTACGACTATGCGATGGACTGTTGGAATGTCAGCTACTACCCCAAGCCTCGTTTTGCGTCTGAGTATGGTTTCCAGTCCTACCCGTCTTTTGAGACCCTAGCGCAGGTGTCAGTGGAAAAGGACTGGACCTACAATAGCGCATTCATGGATCACAGGCAACATCATGCAGACGGATTATTGAGAGAAATTCTCTGGCTTGTTGGCTTAATTTTCATCGTAACTCAAGCTCAGTGCATGAAGACAGAGACTGAACATTACAGACGTTTACAGAGTGAATTAATAAAGGGTGAAGGAAGAACAATGGGCACAATATATTGGCAGTTGAACAGTATTTGGCAGGCTCCCACTTGGTCTTCTTTAGAATATGGAGGACGTTGGAAGATGCTACATTACTTTGTGAAGGATTTTTTTGCGCCTGTAATCGCGTCACCATACCAGGAGGGCGGCATGTTTAGGCTCTGGGTAGTATCAGATCTTGTGAAGCCAATCTCGCGGGGTGCTGTGTCTCTCAAGGCGTGGTCATGGTCTTCCTTCACACCACTGTACAGCAAAAAAGTCTCATTTAACATTAAACGACAAACTTCGAAACAGGTTTACGAAGATGAAGTAGAAACACTCTTACAGTCAAGCAAATGTAAAAGTGCTCGGCATTGTGTCTTTACTGTGAAACCTGTAGACGCGAGCACAGGCCAGGACCTGGGACCGACGAACGTGTTTTATCCGACGAGTTTGTCAGAAGTAGAGGGTATTAGTGATCCAAAGTTGAAGATTGTAAAAGTTGCTCGCATGCCCCAAAAAGGAGAGTTTAGCGTTTATCTTGAGGCCCAGTCTCCCGCTTGTTATGTGTGGCTTGTAGCCAAAGATGTCCGTGGCCGCTTTTCAGATAACGGTTTTCTCCTGATCGAACCTTCGAAGACGGTGATATTCTACAGTTGGCAAGACACCACTGAAGATGAATTAGAGAAGAATCTTTACATTAAGTCTCTTTATGATTTATATGCCTAG

Transcript

rna-pdam_00011074

aatatttattgaagCAATCAAAATGGCGATCACAGAAATAGGGAAAGTGTTCGTGTTTAAAATGGCAATAACACTTTGTAATCTCATTCTAATACATTGCAGAATTATAGAAGTCAATCTCGGAGGCACTTGgattatttcaaatgcaaataacaGCATTTCTGTGCCCGGAACTGTTCCTGGAAATGTTCACACAGCTTTGTACAGGAATGGAAATATTCCGGATCCGTACTTCCGGTTTAATGATGTCAACTATCGCTGGATAGCGTATGACAATTGGGTGTACACAAGGACCTTGGAAGTTTCTGAAGATGTCATatcaaaaggaaacattttgttggtttttgaGGGCCTGGATACAGTTGCTACAGTTCTGGTGAATAATGTTGAAGTTGGCCACTCAACAAACATGTTTCACAGATACATCTTTAGTGTTAAGGGGGTGCTAAAAACTGGAATGAACAAGATTGAGGTGCGCTTCACTTCTGCAGTGCTCTATGCCAAAGAGCAGGCTAAAAAGTTTCCATATCGTGTACCCCCTGAATGTCCAGTCCCAGTTCAGCGTGGTGAGTGCCATGGAAATTTCATCAGAAAAGAACAATGTTCATTTAGTTGGGACTGGGGACCAGCCTTTGTTCCTCAAGGGATTtgGCGAAATGTTTCTCTGCAAGCCTACAACTCAGCTGCTATAAGGGACATCACAGTAACACCTACAAAAGGTTCAGCTAACATCACATGGCAGTTATCTGTGGCACTTTTTGTAGATTCAGCTGAAGATGGTGTGACAGGTACAATAGTGCTCAGTCTTCCTCAGCTGTCACGCTCTCAGAAGCTTGTCATCAAACTGTCACAAGGTAtccaaaaaatttctttcccaGAGATGTTGTTTACAGAAAAAGATAACATTAGGCCATGGTGGCCTCAAGGATATGGCAAACCAAATCTGTACACAGTTAAGGTTGTGTTTTTGAGCTCATCTCGTGATGAACAGTCAAGCATCAATCGTAACATCGGTTTCAGGACAGTAAAACTCAGACAGGAACGAATTGAGTGTGCTCCAGGTTTCAATGGATTCACTGGCAGAAGTGCTCTGTCTGTTTCAGGACGGGGATTTCACTTTGAGATCAACGATTTGCCAATATTTCTGAAGGGAGCTAACTGGATTCCTGCAGATGCCTTTGAGGACCGTGTGACGAGTTCAGACCTTTGGAATCTTCTCAAGTCAGCAGTTGAGGCAAACATGAATGTGGTGAGAAACTGGGGAGGAGGAATCTATCAACATGATGAATTTTACGACATAGCGGACGAGTTAGGGTTACTTGTTTGGGAAGAATTCATGTTTGCCTGTGCCATGTACCCGGTTGATGTAGAATTCTTGAACTCAGTCAAGGAAGAAGTACAATATCAGAAACTTTGTGTGGACAGGTACGTCGGCTTCATCATCATCCGTCCATCATACTGTGGAGTggtaacaatgaaaatgaagaagctCTGGCGACCAACTGGTATAACACCAGTTCTTCGTTCGCAAGATACTACAAGGATTATAAGAAGGAATCAAGTATCACCTACTCCAATTGAGGGAGGGACGCTCGAAAGTGAAGACAAGAGCCGACCATTTCTCTCATCGTCTCCTTCGAATGGAGTAGATACTGAGAAAGAAGGATGGGTGGCAAAAAATCCAAATAGCTCCTATTGGGGAGATGCGCACTTCTACGACTATGCGATGGACTGTTGGAATGTCAGCTACTACCCCAAGCCTCGTTTTGCGTCTGAGTATGGTTTCCAGTCCTACCCGTCTTTTGAGACCCTAGCGCAGGTGTCAGTGGAAAAGGACTGGACCTACAATAGCGCATTCATGGATCACAGGCAACATCATGCAGACGGATTATTGAGAGAAATTCTCTGGCTTGTTGGCTTAATTTTCATCgtAACTCAAGCTCAGTGCATGAAGACAGAGACTGAACATTACAGACGTTTACAGAGTGAATTAATAAAGGGTGAAGGAAGAACAATGGGCACAATATATTGGCAGTTGAACAGTATTTGGCAGGCTCCCACTTGGTCTTCTTTAGAATATGGAGGACGTTGGAAGATGCTACATTACTTTGTGAAGGATTTTTTTGCGCCTGTAATCGCGTCACCATACCAGGAGGGCGGCATGTTTAGGCTCTGGGTAGTATCAGATCTTGTGAAGCCAATCTCGCGGGGTGCTGTGTCTCTCAAGGCGTGGTCATGGTCTTCCTTCACACCACTGTACAGCAAAAAAGTCTCATTTAACATTAAACGACAAACTTCGAAACAGGTTTACGAAGATGAAGTAGAAACACTCTTACAGTCAAGCAAATGTAAAAGTGCTCGGCATTGTGTCTTTACTGTGAAACCTGTAGACGCGAGCACAGGCCAGGACCTGGGACCGACGAACGTGTTTTATCCGACGAGTTTGTCAGAAGTAGAGGGTATTAGTGATCCAAAGTTGAAGattGTAAAAGTTGCTCGCATGCCCCAAAAAGGAGAGTTTAGCGTTTATCTTGAGGCCCAGTCTCCCGCTTGTTATGTGTGGCTTGTAGCCAAAGATGTCCGTGGCCGCTTTTCAGATAACGGTTTTCTCCTGATCGAACCTTCGAAGACGGTGATATTCTACAGTTGGCAAGACACCACTGAAGATGAATTAGAGAAGAATCTTTACATTAAGTCTCTTTATGATTTATATGCCTAGTTAATTTAGTTATTCAATAATGACATCCCTGGGATAgattttgttaattataaGAGATATAGTAAGAAGATGAATTCTCGACTTGTCGTCCTTTGcgacaattaaattttgtaattttcaattcaagcgAAAAGTTGTCCATTCAATCAGGTATTGGTGGTCGAAGGAAACAGCAGGATGAAAatagacttgaaaaaaaaatggcgaaCAAACTACATCTGCTATGCACCACCCCTCAGCGTCCTTCTCTGTGATACTCTCTTTCTACCTTAGCAGGTTCTTGAATAATCATTGCTTGGTAGTCACTAGTCATTATTACcatttaacccctaagagtgactggcatctaatttctcctgaccaattcacacctgaatcaaacattaaggttaggAGAATATAGGAGCTGATCCCcgactaaagaagctcttgattgttagacaaattctcaaGGTtggcatcttaggaaatgtttagagaacagtatggagaatatgcctaccgatgttagagtgtaaagggttaaggtgtTAGCCGTTCACAGTACTTGGGCGAGGAGGTGGCACATACTTCAGACAGTTGTGTGCATCTATGTTGCTTAGCAATCCTAAAACTTGGTCATACGATTTTTTAGTACTGATTGAAACTTTTGGTAGGCATAACATTATGTAGTAGGAAATCGTTATGTTACATGTaactgttatttgtttttaaacatatttttcacttctcGATTTCATACGTAAAGCATATCTATGAAATTGTGAGCCATTCCTCTCAGGGAatattttttgccaaaatgCATGCGTAATTATTTCTAAATTCGTTTTCACTGTATGTTGATAAGCATTCTTcgaaaaaagaagcttttatATTGTATAGTTAAAGGCGTTTTATTGgcattaaattaaatgttttaatacTAACAAGAGGAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17786 all species →	Mannosidase_ig	Mannosidase Ig/CBM-like domain	Domain	Interproscan
PF02837 all species →	Glyco_hydro_2_N	Glycosyl hydrolases family 2, sugar binding domain	Domain	Interproscan
PF17753 all species →	Ig_mannosidase	Ig-fold domain	Domain	Interproscan
PF00703 all species →	Glyco_hydro_2	Glycosyl hydrolases family 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036156 all species →	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR050887 all species →	Family	Beta-mannosidase glycosyl hydrolases	Interproscan
IPR041447 all species →	Domain	Mannosidase Ig/CBM-like domain	Interproscan
IPR006104 all species →	Domain	Glycosyl hydrolases family 2, sugar binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR041625 all species →	Domain	Beta-mannosidase, Ig-fold domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR006102 all species →	Domain	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43730 all species →	BETA-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004567 all species →	Molecular Function	beta-mannosidase activity	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX56927.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.