Gene detail

Detailed information of RMX57286.1 in Pocillopora damicornis

Genomic Location: SczhEnG_684:150921...160235
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00012858

ATGGCGGACTTTGGCGAGGGTCATACCTGTTTAGAATGTGGGAAAAGTTACAATAAGAAATGGAGGCTTGAGGAGCATAAGAGGTCCCATACAGGAGAGAGACCTTTTAAGTGCGAGTTTGAAGGATGTGGCAAATCCTTTATCAGACCATACCATCTGAAGCGTCACTCACTGATCCACACAGGACAGGAAATTTTTAAATGTTCCTACCCAGGCTGTACACAAACCTTCTCTCTCAAGCATAATTTAAAGAGGCACGAAAAGAGATCACATAACAAACCATTTAAGTGCCATTACGAGGGATGTGATGAGGCTTTCAAGAAAAGCACTCAGCTTAGGAGACATATTTGCATTCACACAAATGAAAAGCTGTATAAGTGTCAGGTGGAAGGCTGTGGCACTGGGTTTGATAGTCTATCGAAGCTTCAGAATCACATGAAGAAGCACAACAAAGGATACATTTGCAGTACACCAGGGTGCTCTGCAGCCTTTGACAAATTTTCAAAATTAGCAGTGCACATGAGAAGTCATGGGGTTTCTTGCAACCATTGTGGCAAGACCTTTTCACAAGCTTGTGAGCTCAGGAAGCATGCCGTCATACACAATACGAATCGGAAACTGTACGAATGCCCCAGAGAGGGATGCTCAAAAGTATATTTGAAGGCATTTAACCTCAGAGTTCACATCAAAGCCTTCCATGAGGGCCACCGGCCTTATCTGTGCACATGGGAAGGCTGTGCAAAAGGATTCGCCCATAAGAATTCTCTCAGAAAACATCTAGTGCTCCACGCAGAGAGAAGAATAAAGCCAACACCGTCTCCTCAAGACAGATCACCGTCTAAGAAAAAAAAGAAGAGAAGAAAGCCACTATCACTCGCCAAAAAGCTCAGTGGGTATCGCTCCTCCTTTTCTGAAAGCTCCGACACCCAGTGCGCGGATACAGCGCCGAAAAAGAGAAAAACGTCATATACTCAATCCGGGAGGAATGAAACGGACAGCATCAAGCACACAGATCCAAATGTGAGGCAAGATGTAAACATGCAACGAACTAATCTCAACACGAGTGGCTTAAACGGCATCGCCGAGGCAGCAAAAATGGCGTCTACATCTCTTAACGTCGTTTCGAATAGCACGTTTGTGGCTCAATTAAGTGATGCTACTGTGAACCCTGAAACACGGGGTAGGTTTGAAGGAGCTCAGGGTCAGGATATTGTAGCAGACGGTTCTTCGGTCTCTCTGACTTCATGTGATGATTTTGTAATATTGCCAAATGTGGTTGGTAAAAGACCCGAGGAACTGCAAGATGAAGTTACCTCAAGTCTTTCGACAAACAACGGTCTTGGACAAAATGCAGACTCTTTTGCAGGTGATGTTAGCATGTCTCCTTCCTCTGATGATGGAGGAGAATTCATGGATTTTGAACCAGCCGTTGGTGATAATTCTGTGGCTAATTCCCCTTTACCGTGCGAATCTGAACCTGCAACTGACTTGGTGGAACCATTTAAGTTTGGAGAAGCTTCGAGTGACCAACAGTCATCCGCTGACCTAGTACGAAGGAACACTGAGGGTTCGCCTTTTAGAGTCGACGCGGAAATAATCTCGACTATGGTGACTACTGTATGTGTAAATGATTTATTAGGAGACAATGACTCGGGTTGTTCGAACTCGTCCAAAGTTTCCAGTCCAGTTGATCAAGTGAAATCAGTTGGAACAAACAGTACCCAAAACATTGGTGGGAAAGGGATCATGGAATCCAGTGACATCCGTTCTTCAATGACGGGTGATAAAAACAATTCTGACGCATTCTGCTCTGTATCAGATGAAATAGCTTCGGTTTCGCAGCCTGGACCACCTCTTGGAGGTGACAATAACGTAGACGAAAACGGTGTCAGCGACAAACTTGCCAACGTTACAAAAGTCGTAGACTTCCCGGTTATGGACGATGTGCTTCAAATTATCGAAGAAGAAGAAGAAAACGAACATGACAGCGTTCGGTGTGGAAAAATTACTGACAGTAAGAGTGCTGATAAGGACGAGGTGGTGAGGATGGATAACCTAAGAGTCGATGATACTGGCTATAGAGTGGACATATGTATTGAAACACGGTTGATGAGTTCCACCAACCCGGGGGCGGAAGTCCCACACGGAAACGAGGGGGATGGAGAGTTACCGGAAGAGCAAGACATGGTAGATGATACTTTAAACGGTACTTCTCATCACGATAATATCGATAGCGATGAAGAGGACATCGTTCTTTCAGAACTGGTGAAACGGTTACGAGACTCTAGCGAGCATAAGACCCGAGCAACGAGTGACAGAGAACACAAGGAACAAAGCTGTTCAACTAGTTCAAACCGTAACACGAGACGAGGAGATGAAACATGTGGTCTGGGACGTGAAACAAGTCAAAGTGAGGGCAAGACGACGGTTATTGAGAAAAATTCGCGGACGAAAAGTCCACAAATTGACTCAACCCGTGCCACTAACAGTGTGAACGACTCAAACTCCACCGCAGAAGTTGCTCCAGACAAAATTACCGTGGAAGTGATATCCGGGACACGTGAACGGTTTTGTAAGCCGAATTCAAAGCAGAAAAGTAAGAAAAATGTTGGTGTTCAACTAACCGAGAACAAGTCCGCCTTGCGCACCCAAGCAAAACCTCTAGCCCCTCGGAAAGAAAAGTCTCCGAAAGGCGCCAGTCAAACTAATGTTAACAACTTGAAGGGTGACAATTCTGGCTCGGGGAAAAGCAGGAATTCTGATATAATCGCGGGCAAGAAAGATGAATATGTCGGGGACGTTTCCAAAGCCAAGTTTCGAACTAAAGACAATATTTTTGCCTTTGATGTGCAAACGTTGGAATTATTGTGGAATTTTAAGGGGAAGTGA

Transcript

rna-pdam_00012858

ATGGCGGACTTTGGCGAGGGTCATACCTGTTTAGAATGTGGGAAAAGTTACAATAAGAAATGGAGGCTTGAGGAGCATAAGAGGTCCCATACAGGAGAGAGACCTTTTAAGTGCGAGTTTGAAGGATGTGGCAAATCCTTTATCAGACCATACCATCTGAAGCGTCACTCACTGATCCACACAGGacaggaaatttttaaATGTTCCTACCCAGGCTGTACACAAACCTTCTCTCTCAAGCATAATTTAAAGAGGCACGAAAAGAGATCACATAACAAACCATTTAAGTGCCATTACGAGGGATGTGATGAGGCTTTCAAGAAAAGCACTCAGCTTAGGAGACATATTTGCATTCACACAAATGAAAAGCTGTATAAGTGTCAGGTGGAAGGCTGTGGCACTGGGTTTGATAGTCTATCGAAGCTTCAGAATCACATGAAGAAGCACAACAAAGGATACATTTGCAGTACACCAGGGTGCTCTGCAGcctttgacaaattttcaaaattagcAGTGCACATGAGAAGTCATGGGGTTTCTTGCAACCATTGTGGCAAGACCTTTTCACAAGCTTGTGAGCTCAGGAAGCATGCCGTCATACACAATACGAATCGGAAACTGTACGAATGCCCCAGAGAGGGATGCTCAAAAGTATATTTGAAGGCATTTAACCTCAGAGTTCACATCAAAGCCTTCCATGAGGGCCACCGGCCTTATCTGTGCACATGGGAAGGCTGTGCAAAAGGATTCGCCCATAAGAATTCTCTCAGAAAACATCTAGTGCTCCACGCAGAGAGAAGAATAAAGCCAACACCGTCTCCTCAAGACAGATCACCGTCTAAGaaaaaaaagaagagaagaaagccACTATCACTCGCCAAAAAGCTCAGTGGGTATCGCTCCTCCTTTTCTGAAAGCTCCGACACCCAGTGCGCGGATACAGCGccgaaaaagagaaaaacgtCATATACTCAATCCGGGAGGAATGAAACGGACAGCATCAAGCACACAGATCCAAATGTGAGGCAAGATGTAAACATGCAACGAACTAATCTCAACACGAGTGGCTTAAACGGCATCGCCGAGGCAGCAAAAATGGCGTCTACATCTCTTAACGTCGTTTCGAATAGCACGTTTGTGGCTCAATTAAGTGATGCTACTGTGAACCCTGAAACACGGGGTAGGTTTGAAGGAGCTCAGGGTCAGGATATTGTAGCAGACGGTTCTTCGGTCTCTCTGACTTCATGTGATGATTTTGTAATATTGCCAAATGTGGTTGGTAAAAGACCCGAGGAACTGCAAGATGAAGTTACCTCAAGTCTTTCGACAAACAACGGTCTtggacaaaatgcagactCTTTTGCAGGTGATGTTAGCATGTCTCCTTCCTCTGATGATGGAGGAGAATTCATGGATTTTGAACCAGCCGTTGGTGATAATTCTGTGGCTAATTCCCCTTTACCGTGCGAATCTGAACCTGCAACTGACTTGGTGGAACCATTTAAGTTTGGAGAAGCTTCGAGTGACCAACAGTCATCCGCTGACCTAGTACGAAGGAACACTGAGGGTTCGCCTTTTAGAGTCGACGCGGAAATAATCTCGACTATGGTGACTACTGTATGTGTAAATGATTTATTAGGAGACAATGACTCGGGTTGTTCGAACTCGTCCAAAGTTTCCAGTCCAGTTGATCAAGTGAAATCAGTTGGAACAAACAGTACCCAAAACATTGGTGGGAAAGGGATCATGGAATCCAGTGACATCCGTTCTTCAATGACGggtgataaaaacaattctgaCGCATTCTGCTCTGTATCAGATGAAATAGCTTCGGTTTCGCAGCCTGGACCACCTCTTGGAGGTGACAATAACGTAGACGAAAACGGTGTCAGCGACAAACTTGCCAACGTTACAAAAGTCGTAGACTTCCCGGTTATGGACGATGTGCTTCAAATTatcgaagaagaagaagaaaacgaaCATGACAGCGTTCGGTGTGGAAAAATTACTGACAGTAAGAGTGCTGATAAGGACGAGGTGGTGAGGATGGATAACCTAAGAGTCGATGATACTGGCTATAGAGTGGACATATGTATTGAAACACGGTTGATGAGTTCCACCAACCCGGGGGCGGAAGTCCCACACGGAAACGAGGGGGATGGAGAGTTACCGGAAGAGCAAGACATGGTAGATGATACTTTAAACGGTACTTCTCATCACGATAATATCGATAGCGATGAAGAGGACATCGTTCTTTCAGAACTGGTGAAACGGTTACGAGACTCTAGCGAGCATAAGACCCGAGCAACGAGTGACAGAGAACACAAGGAACAAAGCTGTTCAACTAGTTCAAACCGTAACACGAGACGAGGAGATGAAACATGTGGTCTGGGACGTGAAACAAGTCAAAGTGAGGGCAAGACGACGGTTATTGAGAAAAATTCGCGGACGAAAAGTCCACAAATTGACTCAACCCGTGCCACTAACAGTGTGAACGACTCAAACTCCACCGCAGAAGTTGCTCCAGACAAAATTACCGTGGAAGTGATATCCGGGACACGTGAACGGTTTTGTAAGCCGAATTCAAAGcagaaaagtaagaaaaatgttgGTGTTCAACTAACCGAGAACAAGTCCGCCTTGCGCACCCAAGCAAAACCTCTAGCCCCTCGGAAAGAAAAGTCTCCGAAAGGCGCCAGTCAAACTAATGTTAACAACTTGAAGGGTGACAATTCTGGCTCGGGGAAAAGCAGGAATTCTGATATAATCGCGGGCAAGAAAGATGAATATGTCGGGGACGTTTCCAAAGCCAAGTTTCGAACTAAAGACAATATTTTTGCCTTTGATGTGCAAACGTTGGAATTATTGTGGAATTTTAAGGGGAAGTGACTGAAAACGCTTTTTAAGGCTGCCAGCAGTGAGTCACTAAGGCGGCTTACTGGGAGTTTCGAGTTCATTATCTTGCGGCAGCTCTGGCAGTTTGTAGGAAGACCCAAAACTTTATACACTAGTTTTGAggaattgacatttttcagtCATCAGTCTTGATGTTTTGTCGACATATCTCAGTTCGTCTATCTAAATAGAGAACCCACCTGataattgcttgtttttccaTCGGAAGTTCTGataattgttattgttattgaaaCTTCTTGTAATTTTGGTTATCGATGGAGCTGTCTTCCCTGTTTTGATCCCTGAACACCGTCACTAACAACAGCAGTTAGAGAAAAGTTAGCAGATCTGTACGTTGAATGGTAGAACCTTAAAGCCTTTGTGTTATGGATAACTGCTACCGTTGTAAGGCagtgaaaaatgtgaaaaatggTCTGATTTTAAACCGCATCTGGGATTGCAATTAAAcgtttattatttcaattgctgttttcaaaaatgattaaaactttATCAGTAAATCAGGTGCAACACTATTTCTGTTTGACTAAATGCAGACGAGGTATAACCTAACTGGGTTTGCCTAAAAtttgtgaacaaaataagGTATTTATATCTATTTAAATGTATGATATTCGAAGttcaaaaaagaacaaaggtatcaataatttgatgaaataaaaaggtcTATGACTGCATGTGCCTACTGTGGTATAGTTGTAGAGTATTGCAGTAAAAAAGCAAAGTGGTGTAAAATGCAGAGGGATTAGAATGAACAACTCTTGTCAATGCcaaaattgtgacaaaaggACGACTTAGCTAGAACAGAGTTTGTGCAATGGTAAAGTGAAAGGTCGGAACAAGGCGggaaattaatcctttaatcCTTAAGATTAACAAGGTTCTAAGTTCTTAtaatatcacctctgaaaaaaaggtttaagtcacaagaataaagaaaatgatga

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010392 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR051061 all species →	Family	Zinc finger transcriptional regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46179 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09191	GTF3A; general transcription factor IIIA	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.