Gene detail

Detailed information of RMX57366.1 in Pocillopora damicornis

Genomic Location: SczhEnG_660:196902...207315
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00016036

CAAGCGTATATACCTGACCATCCGCCATTACTAAGCATCTTCGATCACGGGGACTGTGAGAAGAACCGTAAACTTTTTAATTATCGTAAGAAATCTGTGTTCACTGTGATGGATTCAACTACAAGTGGGCAACGAAAGCTGACTCCTCGCGGAGCGATGCCAACCGGTCTGGTACGACAGAAAATGTTAGCAGTTCCTCATGCAGATGGAAAGGTTGTAAGCGCCAGCAGTCAGTGTGACTCTGGATTTGGTGACGACGAAGAATTACGCTCTCGAAGCATAGAAAGAAACAATGAATTCACCAGCTTGCGCAGTGTAGAGGAGAGGACCGAAAATTTGTCGATCGAGGACCCTGATACTGATAACCGACACCCTTCCTTGGAATCACAAGATTCATCGCTTCTGAAAAACGAAGAACTTTATCTAAACTATGCTCACACTAATGACGTGAGGTATCTATTAGCCCAGGACCATGTTAGAAAGCAGTTATACCTTCAAGACGACGATGGTGACACAGCTCTTCATTTGTCGATTATAAATATGAAACCAATGGAAACAGATGCGATAATCTCAGTTGCGCCGTGTAGAGAATGCCTCGACATTTACAACGATCTGAAACAGACACCTCTTCACCTAGCGACAATCACCCGACAGCCCGCCGCAATCCGCAGACTTCTGGAAGCCGGAGCTTCGCCAAACATTCCCGATCGCAATGGTAGAACAGCTTTACATTTAGCTTGTGATCAAGGAGACATTGACTGCGTAAAGGAGATTTTAAGACCTCTGCACGACAAACGATGGGGTGACGAAATGAAAGAGAAAGTATATAACATGCTTCACGAGCGAGACTACGAAGGTTTTGCCGCTTTACACAAGGCTGTATTTGTAAGCAGTGTACAAATTGCCACTTATCTGGTGTCTCTTGGGGCTAATGTTAACATTCAGGATGCTAAAAGTGGACGTTCCCCACTTCATCATGCAGTTGAGGCTGGTAACTTGTCCATGATCAACTGCCTTTTGTACCAGTGCAGTGCAGACCCAGATGCCATGACATTTGGTGAAGTGACACCTCTTCATATTGCTGCAGGACGGGGAATGGAAGCTGTGGTAGCTCTGTTACTTGCTGCCGGTTCTGATCCAAGCCTAACAAACTATGAGGGTGAATCACCTCTTAATATTGCTGCCTCTAAACAGATTCATGACATGAGAGGAAAGCTTGGTAAATTTCCTACAAACTTTAGGTGTATAAGGTACATATCATTAAGCATGGCGGCTTCAAACGACGAAAGTAATAAAGAAAACGTAGCGGATGGAGAGACAGAACAAATCGTGACCATGGAGAAGGTCGTTGCAGCGGATAACAAGGGAATCGACTATGACAAGCTGATCAGGCAGTTTGGTTGCTCCAAATTGGAAGACAAACACAAGGAAAGGATAGAGAAACTAACTGGAAAAGCACCACATCATTTGTTAAGAAGGGGTGTCTTCTTCTCACACAGGGATCTTGACTATGTCCTGGATATGTATGAAAAGGGAAAGCCTTTTTACTTATATACTGGAAGAGGTCCATCCTCAGAAGCCATGCACATGGGACATCTGATTCCCTTTATCTTCACAAAGTATCTTCAAGATGTCTTCAATGTGCCACTAGTAATTCAACTGACAGATGATGAAAAGTTTTTTCTCAAGGACTTAGAGTGCGAAGAAACACACAGACTGGCTTATGAAAATGCCAAAGATATCATAGCTGTTGGCTTTGATGTGAAGAAGACCTTTATCTTCTCAGATATTGATTATATAGGGAGCAGCTCTGAGTTTTACAAAAACATCATCAAAATACAAAGGTGTGTAACTTACAACCAAGTTAAAGCAATCTTTGGATTTGATGAGAGTTCTTGTATAGGTAAAATAGCTTTTCCTGCCATACAAGCAGCCCCATCATTTAGCCACTCTTTTCCTCACACATTTGGAAGCAGAAAAGATATCCCATGTCTTATTCCTTGTGCAATTGACCAGGATCCTTACTTCAGGATGACTCGGGATGTTGCTCCACGACTTGGTTGTCCAAAACCATCTCTGATATTTTCCACATTCTTTCCTGCTCTGCAAGGTGCAAAAACAAAAATGAGCTCCAGTGATCCAACCTCTTCCATCTTTCTCACTGATTCCCCAGCTCAGATTAAAAAGAAGGTTAACAAGTATGCATTCTCTGGTGGTCGTGATACTGTGGAAGATCACAGGAAATATGGTGGAGATATAACAGTAGATATTGCTTATCAGTATCTCACATTCTTCCTTGAGGATGATGAAAAACTTGCTCAAATAAAAGAGGATTATTCTACTGGAAAGATGTTGTCTGGAGAAATCAAGAAGGAACTCATCTCAGTTTTACAGCCCCTGGTGGCAGAACACCAAGAGAGAAAGAAACTAGTCACAGATGAAGTTGTTAGAGAATTTATGACTCCAAGGAAGTTAGAATTTACAGGGTTTAACTCCTGA

Transcript

rna-pdam_00016036

CAAGCGTATATACCTGACCATCCGCCATTACTAAGCATCTTCGATCACGGGGACTGTGAGAAGAACcgtaaactttttaattatcGTAAGAAATCTGTGTTCACTGTGATGGATTCAACTACAAGTGGGCAACGAAAGCTGACTCCTCGCGGAGCGATGCCAACCGGTCTGGTACGACAGAAAATGTTAGCAGTTCCTCATGCAGATGGAAAGGTTGTAAGCGCCAGCAGTCAGTGTGACTCTGGATTTGGTGACGACGAAGAATTACGCTCTCGAAGCAtagaaagaaacaatgaaTTCACCAGCTTGCGCAGTGTAGAGGAGAGGACCGAAAATTTGTCGATCGAGGACCCTGATACTGATAACCGACACCCTTCCTTGGAATCACAAGATTCATCGCTTCTGAAAAACGAAGAACTTTATCTAAACTATGCTCACACTAATGACGTGAGGTATCTATTAGCCCAGGACCATGTTAGAAAGCAGTTATACCTTCAAGACGACGATGGTGACACAGCTCTTCATTTGTCGATTATAAATATGAAACCAATGGAAACAGATGCGATAATCTCAGTTGCGCCGTGTAGAGAATGCCTCGACATTTACAACGATCTGAaacagACACCTCTTCACCTAGCGACAATCACCCGACAGCCCGCCGCAATCCGCAGACTTCTGGAAGCCGGAGCTTCGCCAAACATTCCCGATCGCAATGGTAGAACAGCTTTACATTTAGCTTGTGATCAAGGAGACATTGACTGCGTAAAGGAGATTTTAAGACCTCTGCACGACAAACGATGGGGTGacgaaatgaaagagaaagtaTATAACATGCTTCACGAGCGAGACTACGAAGGTTTTGCCGCTTTACACAAGGCTGTATTTGTAAGCAGTGTACAAATTGCCACTTATCTGGTGTCTCTTGGGGCTAATGTTAACATTCAGGATGCTAAAAGTGGACGTTCCCCACTTCATCATGCAGTTGAGGCTGGTAACTTGTCCATGATCAACTGCCTTTTGTACCAGTGCAGTGCAGACCCAGATGCCATGACATTTGGTGAAGTGACACCTCTTCATATTGCTGCAGGACGGGGAATGGAAGCTGTGGTAGCTCTGTTACTTGCTGCCGGTTCTGATCCAAGCCTAACAAACTATGAGGGTGAATCACCTCTTAATATTGCTGCCTCTAAACAGattCATGACATGAGAGGAAAGCTTGGTAAATTTCCTACAAACTTTAGGTGTATAAGGTACATATCATTAAGCATGGCGGCTTCAAACGACGAAAGTAATAAAGAAAACGTAGCGGATGGAGAGACAGAACAAATCGTGACCATGGAGAAGGTCGTTGCAGCGGATAACAAGGGAATCGACTATGACAAGCTGATCAGGCAGTTTGGTTGCTCCAAATTGGAAGACAAACACAAGGAAAGGATAGAGAAACTAACTGGAAAAGCACCACATCATTTGTTAAGAAGGGGTGTCTTCTTCTCACACAGGGATCTTGACTATGTCCTGGATATGTATGAAAAGGGAAAGCCTTTTTACTTATATACTGGAAGAGGTCCATCCTCAGAAGCCATGCACATGGGACATCTGATTCCCTTTATCTTCACAAAGTATCTTCAAGATGTCTTCAATGTGCCACTAGTAATTCAACTGACAGatgatgaaaagttttttctcaaGGACTTAGAGTGCGAAGAAACACACAGACTGGCTTATGAAAATGCCAAAGATATCATAGCTGTTGGCTTTGATGTGAAGAAGACCTTTATCTTCTCAGATATTGATTATATAGGGAGCAGCTCTgagttttacaaaaacatcATCAAAATACAAAGGTGTGTAACTTACAACCAAGTTAAAGCAATCTTTGGATTTGATGAGAGTTCTTGTATAGGTAAAATAGCTTTTCCTGCCATACAAGCAGCCCCATCATTTAGCCACTCTTTTCCTCACACATTTGGAAGCAGAAAAGATATCCCATGTCTTATTCCTTGTGCAATTGACCAGGATCCTTACTTCAGGATGACTCGGGATGTTGCTCCACGACTTGGTTGTCCAAAACCATCTCTGATATTTTCCACATTCTTTCCTGCTCTGCAAggtgcaaaaacaaaaatgagcTCCAGTGATCCAACCTCTTCCATCTTTCTCACTGATTCCCCAGCTCAGATTAAAAAGAAGGTTAACAAGTATGCATTCTCTGGTGGTCGTGATACTGTGGAAGATCACAGGAAATATGGTGGAGATATAACAGTAGATATTGCTTATCAGTATCTCACATTCTTCCTTGAGGATGATGAAAAACTTGCTCAAATAAAAGAGGATTATTCTACTGGAAAGATGTTGTCTGGAGAAATCAAGAAGGAACTCATCTCAGTTTTACAGCCCCTGGTGGCAGAACACcaagagagaaagaaactagtCACAGATGAAGTTGTTAGAGAATTTATGACTCCAAGGAAGTTAGAATTTACAGGGTTTAACTCCTGAGCACAGATAAAACCAAGCAATGAACATTTTCCTAAAACTGCTTTGTGTATGATGTTACAAGTGTggtaaaaagatttttaaatgcATGTGAACTTAGATTTCCTTTGACACAAGAAGAATGTTAACCATAGAAAGCAGGCAGTAAATATATCAGTGACAATGAGTTAAGTCAGTTACCAGcacttaatttatttcagactCCAACTGTTAAGGAATGTATGCAAGGTCATGCCTTAAGTTCTTAGTGGTAATACTACGAGGGGACTGGGGATATACAGTGTAAAGGATAAAATCAGTTGTACATTGGTGATTTCACCATTGTCTTAGGTGATAAACTCCCAACTGCCCCAGTCCTTTCTCCCACTGTGCTTTCCAAATACCTGTTTCAGGCAGACATCCCCAAAGGAGCAGCTTCAGCCATTAGGAGCAAGGTTCGGTTGTGGAATAACATTAACTTTTCACTCAATTTGTGGCCCAAGAATAAAGCCTTTCGTCAATGAAGCAGTATATACATGTTAGATGCTctttaataatttgaaagtaaGAGGAACAGCAACAACACCTTTTattttgggggggggggaccCTCTTAAAGGTAATGTAAagttttgatatatttttttgccttcacGAAGAGAATTACGGAAacagatttcattttgtttccttcagtATCTTATTGCACTAAGATAAAACCTGCCAAGGCGCTTTTGTTCAAGAGAATTCAAGGGCAGATTTACGCACACCTCTTAAACCCAGATTAGCGAAAAACTACTTTATTTCGAGGAAAAATAGTAGGGTTTattctttggaatttttcaCATAGTGTTCACTTTCCAACTCTGAAAAGTTAGGTGTCGAACTATTTTCGAACTAAGactgaaaagaataaatagcTGGCTTTGTAGAATTGAGAACGGATTCTGTATTGAATTGTGAAGTATGTGAACATGAAGACTACTTTTAAAACTTGGAGACAGCcagaaagataaatatttgtaataaaacaaGAAGTCTGGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR002306 all species →	Family	Tryptophan-tRNA ligase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10055 all species →	TRYPTOPHANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004830 all species →	Molecular Function	tryptophan-tRNA ligase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006436 all species →	Biological Process	tryptophanyl-tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01867	WARS, trpS; tryptophanyl-tRNA synthetase	EC:6.1.1.2	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.