Gene detail

Detailed information of RMX57643.1 in Pocillopora damicornis

Genomic Location: SczhEnG_627:164068...174098
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00015911

atggcggacgaaTCTCTTCGAGTTGTCGAGTTTTACAGTGGAATCGGTGGAATGCACTTTGCTTTGAAAGGATGTGGGTTTGCTGGTGAAGTAAATGCAGCCTTAGAGATCAACACCACAGCAAATCAAGTGTACCAATTAAACTTTGCTGACACAAAACTCCTGCAAAAGAATATAGAGggcaTTACAGTCAAGGAGCTGGATCGTTTATCTGCTGATGTTTTCCTGATGTCACCCCCTTGTCAGCCATTTACAAGGGTTGGTCTTCAAGGTGCATCCAGTGATCCAAGATCAAGAAGTTTTCTTCACATTCTTGAACTCCTACCTCAACTATCAAAAGTGCCAGACTACATCCTAATGGAAAATGTAAAAGGATTTGAAACTTCAGATACAAGagagtattttcttgaaacaCTAAACACTTGTGGTTATAATTATCAGGAATTCTTATTGTCTCCAGTTCAGTTCGGAATCCCCAACTCTCGTCTAAGGTACTATCTTTTGGCAAAGAGGAGACCCCTTCGATTTTGCTTCCCAACACGTAATGAGATTATGGAGAGCTTTCCAGACATGTATCTCCATGCCGAAAATCGATGTCACTGTCAATGCAGTGGTTGTGGAAATGACCCAATGACAACAGGGTATGAAGTAGATGTGGATGATCACAAGCAGTCATCTGCGACAGAGTGCACTGTTGAAATGAATCAAAGATTACCTCATAACCCCGCCTGCTCGAAATGCTTTAGGACAAGAAATGAACGATGTTCAGAAGTACTCGCAATGGAATCAAGTAGTCAAGTTTACGAGCTGAAAAATTGTCGGCGAATTGGTGACTACCTAGAGAATAGTAACGATGATAATTACTTCGAAGAGTTTCTTCTGCCGGAGAAGGTTTTATGTAAATTTGCACTCCTTTTAGACATCGTCAATCCTCAATCTGAGCGTTCCTGTTGCTTCACAAAGGCTTATGGACATTATGCTGAAGGAACTGGCTCAGTGCTCAAAATGGCAAATATCGATGACTCAGATATCTTCAGAAGATACCAGGATCTTAcagatgataaacaaaaagcagAGCTTTTGTCAATATTGAAATTGAGGTATTTTACCCCACGTGAGGTGGCAAATCTGCATGGCTTCCCCTTCGAGTTTCGTTTCCCTTCGTCTTTGTCGATCAAACAACAATATCGCCTGCTAGGAAACAGCCTCAATGTTCTGTTGGTGTCTGAGTTACTGAACTGTCTCTTCCACGCGCCATAGTTTTGCAAAGAGACAGACTGGAGGTTGTTCGTGTCTGTGCGGAAAGAAAACGATGATGCTTTGAAGAAACTGCGACATTAGTTATTTCCGGGAACAAGAGAGAAGACTTGCTCtacaaatcaaacatttttttttatctgtaaataatatagatttagccaacAATAAATGCGGAGCTCCAGTTGGTATAATTTTACAGCCTTTCATTGATAAAGGGTTCCCATATCCCAATTTCGCGACTGGTGGGAGGTGCAGAGAATCATGTAGAGtcaagggtttttttcttttttaatgttttaagggcaggctttcttttttttacatacCAAATAAGAGGGGTGGGGGCATCACTGATAAGGTGCAGAGCATAGTGTGAGTGAAATTGATTGTGAACATTACTTGATTGTGTTTAAGTGACGATAAAAATTACAGTGGCTGTAGTGGCGGCCAAGAGAATGACACCTTTAGTAGTGTGACATTCAGAAGAGGATGAATCCAACTGTCGCAAGAAAGAACTCCGAGCTGAGTGTTCCTTGTAGGAGTGTAATCTACCACCGTTCCGATTAGTACTTCGGATCATACGAAGATCCGATGTACTAATCGGAACGGTGGTAGATTACTGAGCAAGGgattataaactgtttataatctcttgaaCTGAGCTGTGGGAGATTCGTGGTGGGCTAGGCTGTTGAACTATGTAAATTCTACGCAGATTTGCAGCAGATTCTATAGAGTAGGGGATGATCTACTTACTGAGGGTCAATCATGCAATACGAAAACATAGGGCAGAAATAAGACAAGATACTCCGATGTGTCTTGTAATCCAGCCAATTAAATATCGAGTACGAAAAAAGATCTTAGCCTCTTTGACCAGTGATGTGAATGGGACTACAGGGTtggttaacttttt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00145 all species →	DNA_methylase	C-5 cytosine-specific DNA methylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR001525 all species →	Family	C-5 cytosine methyltransferase	Interproscan
IPR050750 all species →	Family	Cytosine-specific C5-methyltransferase	Interproscan
IPR031303 all species →	Conserved_site	DNA methylase, C-5 cytosine-specific, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46098 all species →	TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15336	TRDMT1, DNMT2; tRNA (cytosine38-C5)-methyltransferase	EC:2.1.1.204	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.