Gene detail

Detailed information of RMX57744.1 in Pocillopora damicornis

Genomic Location: SczhEnG_618:62205...67840
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00020082

ATGCCCGCATCGTACTTCTTACATGTTACATCCGCGGCGCACCAGAAGCAACTGATATCTTTGACACAGTCACCACACGAAGTGTTTTTCTGTGAACAGGTCGTTTCAGGTGTTGGTGACGAAGTTGGTAGAACAGACGTGCTTGTTCTATTGCTGCTTGTGGTAATCGGAACGATCTTCGCTCTTGTGGTGAAAATATCCCATATTACCATGGcacaaccaaagaaaattacacaaGAAACATTTGATGCGGTTGTAAGAGAGAATAtagaagaatttgaaatggATTTGCACGAGGCTATAGAAGATGCGAAGGATCAGTTTAAAACTCAGGGCGTTGACTCGTCGAACTTGATCACATCATATATTCAAGATCCAGATACAGGTGAACTTAAACACAGCAATCCTGTGAAAGatGCCTTGGACATGATACAGACATCTTTACAAGAGGATGATTCCCAATTACTCTGGAAAGGATTGCAGGATTTCTCCACTGAATGCGATAAGAGCGAAAGTAACAGAAAATTTGCAGCAAGCAGAGATGCCTTCAAATTACTCTTCTCCAGTTGCAACCATTGTTACTTAGTGAAAAACAAGGATAACCTTGCTGCCAGTCTTGATGCTTTGAGCTCATTTTTGTGTGGCCAAGGAGATCTTGCTGATgttaaaatgattgaatttctctcaaactgtttaaaagaacttaaagaagagattttagttgaaaaaattgttaaaactgtaAGAGTTGCTTGCATCAAGAGTGAATCGAATCGTCAGACTTTTGTTGTTAATGGTGTCATACCTTGTTTAGTCGctattttgaaagatttcagCCAGTCAGGAAAAATCGTGAAGGAAACATGCCTGGCCCTGCGTGTTTTCACATTTGATGATGACATGAGTGTAGCTTTTGGGAAAGCACACGAGCATGCCAAGTTGATTGTGGCAGAAAATGCATTTGGAGTACTGTTGGGTATCATGGAACATTACAAAGACGTGGAGGTGGCAAGTGAGTTATGTGTCACCTTGAGTCGTCTGGCAGTGAGGAATGAATACTGTAAGGACATAGTTGATATGGGTGGACTGAAGATGGTTCTGAAGTTATTACAAGACCATACTTCTAACCAGAATATTTCTAAGCAGGTTTGCACTCTTCTAAGAGCCATAGCTGGAAATGATGATGTCAAGACTTCCATTGTTGATGCTGGTGGCCTGGGACTCATCGTTGCTGCCATGACGACTCATGCTAAGCAGCCAACAGTAGCGGAACAAGGATGTGCAGCTCTAGGTTCTATTGCTTTGAGAAGCCCCCCTAACTGTTCAGCTATTGTTGCTGCTGGAGGGGTAGAAGCCATTGTCAAGGCTATGCAGATTCATCCTGATGTTGCTGGAGTACAGAAACATGCCTGCCTGGCTCTGCGCAACCTGGTGGCTCGTAATCCTGATCACTGTGACATCATCCTTGAAGCGGGAGCTGAAAGCTTGATCAGGAAAGCACATGGCAAGATGGGTGATTGTGAGGATTTAGCTAAAGCAGCTCTCAGAGATCTTGGTTGTGATGTGGAACTTAAAGAGCTTTGGACTGGAACAGGACAAGGCAAGGTTCATCACTGATTTGAGAGAGCTCAAAGctttttaaccaatcaaattcaaccATAAAAAGAATCACTACTTTGTCAATGACAAATCCAGTGccatttgcttgttttgactGCAAGTTCTCCTCggcttcttttcatttttttttgtttttttttttgactaaGACTGGTTTTTGTAATCACTGACATTGGTTTTGAATTCAGACATTACCCTGTAAAAAGGGCTATTGATAATTGTAAGGTAACAGTGCCTTGCCTAGTGTTTTTGTCATAGTAGTTATCATGATTCAACCAAGGAAAATCAAAGCATTAATTTGATTGCTTGCATAGTTCTCATTTTGCACCAAACTGTGAGAAAACTGTGGACTCACTTTTGGTGTGACCAAGCCATACAAGAATGTGTGTTAGTTAGAACTCATCATCAGCCTATATttaacattgttttaaaataagatatttaatTGCATTAGAGTGTATTaaattgtaacaattttaaaatca

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009713 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22895 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24166	ARMC6; armadillo repeat-containing protein 6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.