Gene detail

Detailed information of RMX57883.1 in Pocillopora damicornis

Genomic Location: SczhEnG_574:201297...215319
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00006704

CTCAGACATTGACATGAGTTTGATACTAAATTAGAAAccccctacccctcccctggaTCGTTCAATATTACCCGCAGATAAGCGGAATCTAGTTTCAAGGTTTGCTGGATATGTTTGCTCTTGCTCCTCTAAAGATGGGTCACCTAGTTAGCTTCGGTTTTTGTTGATGTAAACTCATGGAGAACCAGATTTTCACAGCAAGTTATCATCGTTATGGTAGCCAAGAGCAGCTGGTTACAGAAATGAACGAcaatgatgaagaagatgacGATTTTGACGAAGAGGAAGATGATGAGGATCTTGAAGACGGCGAGGATATCGATCTGAGAGAACATGCGTACGACTTTGTTCAAGTCGCTGCGTCTCCCAAGCATATTCACTTCGTTACCGACGCTTCTCTCAGCTCGTGGAGTGATCCAGAGGCGGCATTGGAAACGAGCACTCGTTTAGGGAAATTCCGAGGGTCCCTTAGAAGAATTGTGGAGCATTTTTCTGTTAGAGTATTCAGTCTCCTTTTGGTATTAGCagatattattattgtcatagTTGACTTGGCCACTGCAGGAAAAGATGAAAGGGAGAGCCTTCTTCCACAGATGGCTAGAAATCATAGATCTGATATTTCATTCATCCTCACCCTGGCCTTTTCTCTCCTGACACTAGAGGAACATGGCTATGCAAAACTCATCATTACTGCTCGTCTTGTGCGAATATTGCTGTTTATTAGAATTGTCACAGGAAAAGACCAACTTGAAAGAGCTACAAGAAGAATGATATCacagaacaaaagaagatATCAAAAGGATGGTTTTGATTTAGACTTGACATATGTAACAGAGAGAGTTATAGCCATGTCATTCCCTTCGTCTGGAAAACACAAGTTATACCGTAATCCAGTGTCAGAAGTTGTGCGATTCTTGGATACAAAACATCCTGACCACTACAAAGTCTACAATTTATGTAgtGAGAGAAGCTATGATCCATCTGTGTTCCATAACAGAGTGGAGCGAGTTCTCATTGATGATCACAATGTACCTAGGCTTAGTCAGTTGTTATATTTTACGCACAATGTGAGAGAATGGCTTGACAGAGATCCTAAAAATGTTATTGCTGTTCATTGTAAAGGAGGAAAAGgtagaACAGGGACTGCAATATGTGCTTGGCTTATTGCCAGTGGTCAGTTTGAGCAGGCTAAGCATAGCCTGGAATATTTTGGGCACAGGAGAACTGATTATTCAGTTGGAAATCAATTTCAAGGAGTGCAGACACCCAGTCAGAGTCGTTTTGTAGGTTACCTGGAAAAAGTGTTTACCAAGTTAAATGGTCGACTTCCTGCCTCTGTGTCATATCGTATTAAAAACATCAAGATTGATGCAATATCTGgTATTGGAGatggaaatggaaaagatCTTTCGTTTGAGATAATTATCAATGGTAGCACTGTTACGACACTACATCTATCAAATTCACGTCAAGGACAGATACAGCACCTCAGAGATCTTGACAAATTAGTTATTATTCTCTATGAGGCAGAATCCCCTACTCTTACAGGAgacatcaaaataaagttttactCATCTAATTCAAATGTTCCAAGAGGGTATGACCAGTGtgctttcttcttttggtttCACACAAGTTTTATAGAGAACTCCAGactGTTTCTACGTCGTGGAGAGTTGGATAATCCCCACAAACCCAAAACTTGGAAAACatacaaagagaattttgctGTGGATATTACATTTACAAAACTTTGATAACAACAAACCAAGACAACTTGAGTGGGTCAACAATTTGCCCCAAGGGGAAGGAAATATTGTCAATTATTGGAAGGAAATGAATCAGTTGATTTATATATAACAAGATTTTCTAAACATAAGATAAATCATGatgtcagaaaatttttctgcatttttttctgttgtgtcACATCCTTTTTTTTGGGAACATCACTATGTCAGGTCCACAgccgcaatttttttttttgttagttggTGGATTACTTGATTAATCCAAGCAATATTATACTCAAAGTAAGATAAAGTTACTGCATGACCTTGACTTTATTCAGCCCACATCAGGCTCTCTGCCATGGAGcaggtcaaaagaaaaaaaaatggggaaGGTAAAAGTAGAATGtgtaaaaacttgaaattaacCGCTCAAAGAGTATCCCAGGAGATTTTCGACTAGAATGAGGTTTATTTCACTTGCCCTTTCACTAACACTtttcactgactgactgaggACTTGGAACCTTCTGTTACACTGAAGAACCAACATCTCAAAAGCCTATCCTGGTGGGAAATTTTTATATGACAAAATTACTCTTGCAATGGGTGTAATTAACTTCTATTTTTATATATAGagtgaaaacaattaaaaaggaTTTATGAACAGATAATGTGAAAGTTTAGATGCATTGTGAATTAATCacttatttaaattatatattGTCATAATATCTATAAATTTTAGTGAATAATTAGGGTCaatctaatttttattaaagggtaattattttttccatcctaaagttcttttttctacTATATCCAGGGAGAGtgcagttttgttttaaggttacatttgaaattagattttgtttctgtggtAATTTGTAgctctttaaataaaaaaatgttctttattAAGAAATAATTGGTCCCCATTTGTtgccaaaaatttcaagtgttgaTATATGTGATTGGAGTGTTTCTTTTATtgctattttaaaacagaatttggTTGCATTTACCCTGTGGTCTCATAACACATTTTCTCAACACATGAACTAATAAGGATAAGCAAGTATACTTGTTTAGGTTCTGTtagttcaataaaatatttaggCCCTGTCATTggtatgcaaattttccttaccATTCGCTTTACATTTTgtatggtactgacaaggagaatttgtttaacaatcaagagcttcttttgttggtaacatttccttcactctcatgaccttaatgtttgattcaatttaagagaaattaggtgctagTCACTCCTAGAGGTTTAAAGCAGCTGTGGttaatattgttatttaaatAGAGAAGACTTGTTTAATTTACAGTGAGGCAGCTTTTGTGCTCAGTAGTATTTTGTTCACACATTAACAATTAGCTTCTATGTCTTCTTTCTCCTTGTAACAATCAGATATGATTCCTGTATCATTTCCTGGGCAGAATTTTGTACTATTATTGGCTAAGGAATGAAAGAAGATTTACTTGTACAACTTGCACTATGCCCAATACCAAGtcaactctttttctttcaaatatattGTAGATGAAATATTCTCGAttaccatatttttttaaggtcttAAATGTAGTTATGGATAGGAGTACTCAGTGGCATCTCTGATATAGTTGTTAGGCTGAGTATTAATTTTCTAgcaataattcttttaaatcaatacTTTGAAACAATAAAGATGATCATTTCATCAAACAGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10409 all species →	PTEN_C2	C2 domain of PTEN tumour-suppressor protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014020 all species →	Domain	Tensin phosphatase, C2 domain	Interproscan
IPR051281 all species →	Family	Dual-specificity lipid and protein phosphatase	Interproscan
IPR045102 all species →	Domain	TPTE, protein tyrosine phosphatase-like catalytic domain	Interproscan
IPR029023 all species →	Domain	Tensin-type phosphatase domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12305 all species →	PHOSPHATASE WITH HOMOLOGY TO TENSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0014065 all species →	Biological Process	obsolete phosphatidylinositol 3-kinase signaling	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0016314 all species →	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0048870 all species →	Biological Process	cell motility	Interproscan
GO:0051896 all species →	Biological Process	regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18079	TPTE, TPIP; PTEN homologous phosphatase	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.