Gene detail

Detailed information of RMX58075.1 in Pocillopora damicornis

Genomic Location: SczhEnG_547:87652...105071
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00013837

ATGGATGACATTTCTCTGAGGAAACGACAGCTGGACGACAAACTAGCTCAGGAGAAAAACATCTTGGCTTTTCTCAAAGACAGCTTGGAAAAGACTGATCAAATTACAGGGAACATGCTTGATATCTTGTCCAAGTTTGAGGTGCGCATACATAAACTGGAAGACACCATTGTTCCTGTTCATCGGGAAACTGATGACTTGCAAAGAAGACAAGCTAATATTGATAAATGTTTGTCGGCATTGGATCATGTGATTAGTTATCACCATGTCTCTGCTAGTGTGGAACATGTCATCAGAGATTCCCCCACTGGTCAACTTGAAGCTTACATTAAAAATCTTGAAAGAGTGCTAGATGCAATTGAGTTCTTTAATCACAACAATCCTAATTGCATGGAACTCTCTAGCCTGACTGCTCTGCGTGATTATGGACGTGACTCACTAGAGAAAGAATTCCGCCTGATGTTAAACAGGCACAGTAAACCTGTTCCTGTGGAGATGATTGTGGAACTGGTGGAGAGTGAGACAGAAAACTCAAAGGAAAATGTCAAGCTAGAGCATTTATCAGAGAAAGTTTTAGAAGACTTATGTACCATAACCCACTGGCTGAATGGACCTGGATATGATGAAACTGTGGATTTTATGAGTGTCTATGCCCAAATCAGATCGAATTCCCTTGTGCGATCTCTACAGGGGTTAAAAGATTGTTATGGTAGCAAGATGAAGTCTGCTCCAGGTGGTATAACCACACCCACCAGAAAGGGAACAGCTAAAAGAAGAGAAGGCTTGCGTCGTGTTCCGTCAAAGTCAGAACATCATGGTCTTCCTCGTCGTACTTCAGCCATCCCAACAGAGGTTGGAGCTTCCAAAGAAGAAGAAGAGGAAATTGATGCTGCAAACTACATTGTGTTTTGTAAATCTTTGCTGAGACTCATACAGAGTGAACGAGAGCTAATGAAGAGCATCATTCCCGAGCAGAGTCAAAGCACCACTTTTGATACACTTATTCAGGCCGCTATGGAGGATTTCATTGCCGAAGGGGAGTCCATCATAAGTATCCTGAAGCGACATTTTGGCAAGCACAACTACTCCGCCATTCAGCAGGTGTTTCCAATACTTAAGGAATTCAATGCTATTCAACCCGATTTCTACGTCACACTGCAGGAGACATTTCACAGAACTCAAAAACAGTTCCCAACTCTAATTCATGAATTGGAGTCCTTGTCTGCCAAGGCCTTGGACGATTTTAAGGAGGGCATTAAGCAAAATCCTGACAAACATTCTAACATGCCAAGCGATGGAACAGTTCATGAACTCACTAGAAACACACTTATTTTCATGGAACAGCTCCTACCCTACACTGAAACAGTAGGAAGCATGTTGGTAACTATGCAAGAGGACCAGAGCGGAAATTTCTTCACAAGAGAAAAAGAACTCTTCGTAAAGGTTGTTTCTGAATACATTCAACGTGTACTTGGGGCACTGGGACTGAATCTTGAGCTCAAGGCAACAGTGTACGAGGCACCAACGCTTAGTTCTCTCTTCCTGCTGAATAATTACAACTACATAGTAAAAGCCTTACAAAGGTCAGGTCTCCTCACTCTTCTTCAGGAAGGTGGAATTACAGGGGTTGAAGATCAATACCAGCAGTTGATCGCTGAGCATAAAGAAACCTATCAGAAGTGCTGGAATAAAGTTCTTACTGTTTTAATGGAAGTGGAGAAACCAATGTCAGGTCATAAAGGAAATGATCCACAGGCCAAGCTGAAAGATAAACAGCGACAAATGATAAAGGATAAGTTTAAGGTAAACATTGAATTGATAAAAGGTTTTAATACAGAATTTGAAGAGCTTTATCAGATACAGAAAACCTATGCAGTCCCTGATACACAGCTTCGAGATCAACTGCGGGGTGAGAATGTGAACCTTATTCTACCCCTCTACTCTTCATTTCGACAGAAATTTGCTAATTTACCCTTTACAAAGAATCCTGAAAAGTACATCAAATACTCTGTGGAGGCTGTAGAAGTCATGATGAAAAAGTTCTTTGATGTCTCGGCATAA

Transcript

rna-pdam_00013837

AAAACATCGGAGAAGATTCGCAGCAAAGGAGCCGTTAACTTTTTGGCAACCAAACgttgaaaaataagtttctcatcgaaaaaaaaaatgaacttcgATCGAAAACCAGTAGGATAGTAGCTCGATTTCCTGTGGATAACGATGGATGACATTTCTCTGAGGAAACGACAGCTGGACGACAAACTAGCTCAGgaGAAAAACATCTTGGCTTTTCTCAAAGACAGCTTGGAAAAGACTGATCAAATTACAGGGAACATGCTTGATATCTTGTCCAAGTTTGAGGTGCGCATACATAAACTGGAAGACACCATTGTTCCTGTTCATCGGGAAACTGATGACTTGCAAAGAAGACAAGCTAATATTGATAAATGTTTGTCGGCATTGGATCATGTGATTAGTTATCACCATGTCTCTGCTAGTGTGGAACATGTCATCAGAGATTCCCCCACTGGTCAACTTGAAGCTTACattaaaaatcttgaaagaGTGCTAGATGCAATTGAGTTCTTTAATCACAACAATCCTAATTGCATGGAACTCTCTAGCCTGACTGCTCTGCGTGATTATGGACGTGACTCACTAGAGAAAGAATTCCGCCTGATGTTAAACAGGCACAGTAAACCTGTTCCTGTGGAGATGATTGTGGAACTGGTGGAGAGTGAGACAGaaaactcaaaggaaaatgtcaagCTAGAGCATTTATCAGAGAAAGTTTTAGAAGACTTATGTACCATAACCCACTGGCTGAATGGACCTGGATATGATGAAACTGTGGATTTTATGAGTGTCTATGCCCAAATCAGATCGAATTCCCTTGTGCGATCTCTACAGGGGTTAAAAGATTGTTATGGTAGCAAGATGAAGTCTGCTCCAGGTGGTATAACCACACCCACCAGAAAGGGAACAGCTAAAAGAAGAGAaggCTTGCGTCGTGTTCCGTCAAAGTCAGAACATCATGGTCTTCCTCGTCGTACTTCAGCCATCCCAACAGAGGTTGGAGCTtccaaagaagaagaagaGGAAATTGATGCTGCAAACTACATTGTGTTTTGTAAATCTTTGCTGAGACTCATACAGAGTGAACGAGAGCTAATGAAGAGCATCATTCCCGAGCAGAGTCAAAGCACCACTTTTGATACACTTATTCAGGCCGCTATGGAGGATTTCATTGCCGAAGGGGAGtccATCATAAGTATCCTGAAGCGACATTTTGGCAAGCACAACTACTCCGCCATTCAGCAGGTGTTTCCAATACTTAAGGAATTCAATGCTATTCAACCCGATTTCTACGTCACACTGCAGGAGACATTTCACAGAACTCAAAAACAGTTCCCAACTCTAATTCATGAATTGGAGTCCTTGtCTGCCAAGGCCTTGGACGATTTTAAGGAGGGCATTaagcaaAATCCTGACAAACATTCTAACATGCCAAGCGATGGAACAGTTCATGAACTCACTAGAAACACACTTATTTTCATGGAACAGCTCCTACCCTACACTGAAACAGTAGGAAGCATGTTGGTAACTATGCAAGAGGACCAGAGCGGAAATTTCTtcacaagagaaaaagaactctTCGTAAAGGTTGTTTCTGAATACATTCAACGTGTACTTGGGGCACTGGGACTGAATCTTGAGCTCAAGGCAACAGTGTACGAGGCACCAACGCTTAGTTCTCTCTTCCTGCTGAATAATTACAACTACATAGTAAAAGCCTTACAAAGGTCAGGTCTCCTCACTCTTCTTCAGGAAGGTGGAATTACAGGGGTTGAAGATCAATACCAGCAGTTGATCGCTGAGCATAAAGAAACCTATCAGAAGTGCTGGAATAAAGTTCTTACTGTTTTAATGGAAGTGGAGAAACCAATGTCAGGtcataaaggaaatgatccaCAGGCCAAGCTGAAAGATAAACAGCGACAAATGATAAAGGATAAGTTTAAGGTAAACATTGAATTGATAAAAgGTTTTAATACAGAATTTGAAGAGCTTTATCAGATACAGAAAACCTATGCAGTCCCTGATACACAGCTTCGAGATCAACTGCGGGGTGAGAATGTGAACCTTATTCTACCCCTCTACTCTTCATTTCGACAGAAATTTGCTAATTTACCCTTTACAAAGAATCCTGAAAAGTACATCAAATACTCTGTGGAGGCTGTAGAAGTCATGATGAAAAAGTTCTTTGATGTCTCGGCATAACTATCGTCCTGTTGCTATACGTATTCAATACCAAATATTGATggtgttctgttttttttattcttttaattcaagttAATGGCATTTATCGTTGCTAAAGTACatttaaaagacaaactttGTTGTTCATAACATTTTGTAAAGTCATTTTTCCAGCTTTCATGCGAAAACTAACCCAAAAGTACATCCTTAATGTACTcaaaaaacagaggaaaaatataTCACTTTGTGAAATGAATACTAATGAATACTGATATAAACATTGAAAGAAGGTTCTATAATAAATCATAATTAACAGGTTATTCAGGCTGCCTTTCCCACTTCACTGAATTTCATTAGCCCTGTAAccctcaagatctgattattaattcttccCTCTGCTACGCATTTTAGTTTCGGGAGTTTGGTagtagatcaagataacatctTCCTAATACGTtcgagtattctcatcacttgtttgcgGAAGGCCGATCACATCTGAGAGACAAAGGGTTTACATCAAACGAGAGAATTGAAATGTTGCAGTACATTAGtggataaaaatgtttgtattaCAAGGCGTAAAATTCAATCGGTTGGAATCGTCAAAATAGACCTGTTAGCTTTAAGTCAGCTTTTGAGTCAGGATAAATTTCATGCTCAAAGAAAGATATCGTCCTCGCGTTCAAACATGCTGAAGAAGTTCCTGCCGCCTTCACATTTGCTACTCTCTAaaaacctTGattcatgtttatttttttccccatttcttacatttttcttctttttcccgTCGGCTCGCCATTTGAACATTCCAGAAACCGTATTGTTGCTCTTTTCAAATGTCCCTTCTTCTGTAAGCTTCTTTAGCCACTCTTTGCGATCAAAACTGCCACTTGCACTCGATAAGAGCTCAATATTGCTGATATCAACTGGTTCGATCAACAACGTTTCTGCGTTTATCTCCTCAAATAGATCGATGAactcgttttgttttcgttttgtgAGTAGTGTGTTGTCAGTCATTTTCAAACTCCTAGAAGCTCTGCGCAGTGGGGATATGTCATCCTCTTCATTTGCTGTTCCGatacttttccttttagcaCGGTCATCTTGAAGATTACGCTGTTTGactgaatatttattaatgGGTGAACGCTCAGGTTTCTTCTCCGCGACATCTTCCTCTCCTTTCTTTGGCGGGCCACTCTCGGCTCCATTAGCGACAATTTCATTCACACATTTTAGTTTCTGGATCCCTCCTTTGTTCGTCGTGGTTTCGGGACTGAACTTAAACTTCCTCCATGactgaaaaagttttgtctTGATCTGTCGTTGTTTCAAGAATGGGAATCTGCTCGCAAACCGCGAATAATTATttgGTAACACGACAAACAAACTGACAGCGGAGATCTACTTCGACCAGACTAGAGACAGATAAAAGCCTTACGCAAAGTTGATTGCTGGAGATTGCTGGCAGGAAGTTTTTCAGTGAAAGTAAATTTCACAGAATATAGCGGATAAAagtattgttttgattgacaTCC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20669 all species →	Exo70_N	Exocyst complex component Exo70 N-terminal	Repeat	Interproscan
PF03081 all species →	Exo70_C	Exo70 exocyst complex subunit C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR004140 all species →	Family	Exocyst complex component Exo70	Interproscan
IPR046364 all species →	Domain	Exocyst complex subunit Exo70, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12542 all species →	EXOCYST COMPLEX PROTEIN EXO70	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07195	EXOC7, EXO70; exocyst complex component 7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.