Gene detail

Detailed information of RMX58096.1 in Pocillopora damicornis

Genomic Location: SczhEnG_547:154948...165932
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00013845

ATGGCGGATAAACGGAAGCTACAAGGTGAAATTGACCGTTGCCTAAAGAAAGTACAAGAAGGTGTAGAGACATTTGAAGATATCTGGCAAAAGGTTCACAGTGCGTCAAACGCGAATCAAAAAGAAAAATATGAAGCAGACCTCAAGAAGGAGATCAAGAAACTACAGCGGTTGCGAGACCAGATTAAGACCTGGATGGCGTCTAATGATATCAAAGACAAGAGAACTCTCCAGGAAAACAGAAAACTTATCGAGACGCAAATGGAAAGATTCAAGGTTGTTGAGAGAGAGACTAAAACCAAGGCCTATTCTAAAGAAGGACTTGGACTTGCTGCAAAGATAGACCCTGCAACCAAAGAGAGAGAGGAGGCCAGTATTTGGATTACAGAAGTCCTAGAAAGGCTACAAATAGAGGTGGATCAAATTGAGTCAGAAATTGAACAAGTTTATGCAGGATCACGCAAGAAGAAACTTGATAGAGATAGACAAGATAAGGTGGATGAATTGCAAGAATGGGCTGGTAGACATCGGCACCACAACCAACAATGGGAGACAATCCTTAGAATGTTGGACAACTGTACAATACAACCAGATGATATTAAGAAGTTACAAGAAGACATGGATTATTATCTAGACTGCTACAAGGAACCTGACTTCCAAGAAAATGAATTCATGTATGATGACTTTGACCTTGAAGAAAACATTGCAGCCTTAAACACTTTGGCAACTTCCCCTACTGAAGATGATGACATAATTGTCAATCACAATCATGTTCCAATGTCTCCAAGTTCTACAATACCTCCAAACTCTCCTGGCACCCCAGGCACTCCAGGCACCCCAGGCACACCAACCACAACTGGACCAAACTCAGGCACAGGGACCAAGATAAATCTGAGCTCACCAAGGAAAAACTCAAAGAATGATGCTTCACAAGCAAATAGTTTGCCAAACAACTCACCCCCTCGGACATCAGCCTTCAAGATGAACAATTCAAGTCAGCCTGTAGTTACACAGACAACATCAGCAACCACTACTGGTCCAACAATTATAAAAGCTAGTAATACACCAGCAAAAGTTGTTAATTCAACAATCCACACAAATGCAGTAGAAAATCATGAGGCCAGTAATGGTGAGGAGCCTGTACAAAAGTCATCTCAACCTAACACACCTCCTCCACCTGTGTCAGGATATGCTGTGGCTGCAGGCGCACAACAGAACCATGTTGAAAGTGCACCTACATCACCTGCAGTTTCAGTAGTACCAACAAGACCAGTGAATCATATTTCATCGGCATCAACGACAGTACCAAGTAGTTTATCATGGACTAGTTCAGCGCCTGGAAATGGCACTGATCTCTCCACACATACTAACCACTTTTCTGAGTCAGAAAGTGTTGCATCGAGTGTGGCTGATTTTGTGTCATCAATTGCATCATTGTCCATTACCTCTCCCCCAACGATATCAACAGCAGTACCACCTTCACAATCCAACTCCTTACCTCCATCATCACCTAGTCTTAATTCTGTCCTGGGGATGAAGCCATCAACATCTGCAACACAGGTCCCGGTACAACCAGTGTCCACAAGTATGACTTCATCTCTTCCTCCAACTTCAGTACCGGTTTCTGCTCAAGGGTCAGATTTAAGTGGGTTTAACTTGTCAATGACTGCACCCCTTTCATCAAATTCTGGCCCAGTCTTACCTAACTCTACAGTGTCAATGGGAAGTGAACCCTTAGTATCATCTGCTAATCCACCAGCATCAATTTTAAGTGGTTCTCATCTCATGTCAAACTCAGGACCAACTCAGCAGCCTTCAACATCTAATTCATTCTCATCATTGAAGTCCATGGCTGCTCAAGCAGTGGCGACAGCTGGATTGAACAATTCTATCTCGACGCCAACGGACTACAGCACAGAAAGTAGAGGTCTGTTTGACTCAAGCAGTAGTCAAACAACAGACAAGACCAAAGCATCGCAAGAGACAAATACTGCGCATCTCCAGCCATTACTGGGTGTGGCTCCATTAGGTCCTGTGCCCCTAAACAAGGAGAGGTGTTATCAGCTGGCTATGTTGGAAACTGCATATCACCACCTACCTCTTCCAGCTGATTCGGAGAAAGTCAGACCTTATTTACAGCGCAGCCCTTACCCAACACCAGCGCATCATCATCAACATCCCCCACAACATGTAGACTCGATAGAATTCTTCCAAAGATTGTCCACGGAGACGCTCTTCTTTATTTTTTACTACCAAGAGTTAATACTCGAACGTGAGGCTCCCGCGGTCGGATTGGGAACGAGAGCACAGTACTTAGCAGCAAAGGCTTTGAAGAAGCAGTCATGGAGATTTCACACCAAGTACATGATGTGGTTTCAGAGACACGAAGAACCTAAGGCAATCACGGATGAATATGAACAAGGCACCTACATCTATTTTGACTACGAAAAATGGGGTCAAAGGAAAAAAGAAGGCTTTACTTTTGAGTATAGATACTTGGAAGACAAAGAACTCCCTTAG

Transcript

rna-pdam_00013845

TATCCCATAGTACTTTTTATGGCGAGGTGAAAAGCATCATTTTGCCAAGTTATCCCTTACAGTTCGTGAATTAATTTCCCCCACTTTTCTCAATCATTGCGGAATTTTAACGCTGAATATCCCAGTAGTTATTCCAGCTACGAAATTATGCTTCTTAAGAGCGACGCAGCGAGGTAATGGCGGATAAACGGAAGCTACAAGGTGAAATTGACCGTTGCCTAAAGAAAGTACAAGAAGGTGTAGAGACATTTGAAGATATCTGGCAAAAGGTTCACAGTGCGTCAAACGcgaatcaaaaagaaaaatatgaagcaGACCTCAAGAAGGAGATCAAGAAACTACAGCGGTTGCGAGACCAGATTAAGACCTGGATGGCGTCTAATGATATCAAAGACAAGAGAACTCTccaggaaaacagaaaacttatCGAGACGCAAATGGAAAGATTCAAGGTTGTTGAGAGAGAGACTAAAACCAAGGCCTATTCTAAAGAAGGACTTGGACTTGCTGCAAAGATAGACCCTGCAACCAAAGAGAGAGAGGAGGCCAGTATTTGGATTACAGAAGTCCTAGAAAGGCTACAAATAGAGGTGGATCAAATTGAGTCAGAAATTGAACAAGTTTATGCAGGATCACGCAAGAAGAAACTTGATAGAGATAGACAAGATAAGGTGGATGAATTGCAAGAATGGGCTGGTAGACATCGGCACCACAACCAACAATGGGAGACAATCCTTAGAATGTTGGACAACTGTACAATACAACCAGATGATATTAAGAAGTTACAAGAAGACATGGATTATTATCTAGACTGCTACAAGGAACCTGACTTccaagaaaatgaattcatgTATGATGACTTTGaccttgaagaaaacattgcaGCCTTAAACACTTTGGCAACTTCCCCTACTGAAGATGATGACATAATTGTCAATCACAATCATGTTCCAATGTCTCCAAGTTCTACAATACCTCCAAACTCTCCTGGCACCCCAGGCACTCCAGGCACCCCAGGCACACCAACCACAACTGGACCAAACTCAGGCACAGGGACCAAGATAAATCTGAGCTCACCAAGGAAAAACTCAAAGAATGATGCTTCACAAGCAAATAGTTTGCCAAACAACTCACCCCCTCGGACATCAGCCTTCAAGATGAACAATTCAAGTCAGCCTGTAGTTACACAGACAACATCAGCAACCACTACTGGTCCAACAATTATAAAAGCTAgtAATACACCAGCAAAAGTTGTTAATTCAACAATCCACACAAATGCAGTAGAAAATCATGAGGCCAGTAATGGTGAGGAGCCTGTACAAAAGTCATCTCAACCTAACACACCTCCTCCACCTGTGTCAGGATATGCTGTGGCTGCAGGCGCACAACAGAACCATGTTGAAAGTGCACCTACATCACCTGCAGTTTCAGTAGTACCAACAAGACCAGTGAATCATATTTCATCGGCATCAACGACAGTACCAAGTAGTTTATCATGGACTAGTTCAGCGCCTGGAAATGGCACTGATCTCTCCACACATACTAACCACTTTTCTGAGTCAGAAAGTGTTGCATCGAGTGTGGCTGATTTTGTGTCATCAATTGCATCATTGTCCATTACCTCTCCCCCAACGATATCAACAGCAGTACCACCTTCACAATCCAACTCCTTACCTCCATCATCACCTAGTCTTAATTCTGTCCTGGGGATGAAGCCATCAACATCTGCAACACAGGTCCCGGTACAACCAGTGTCCACAAGTATGACTTCATCTCTTCCTCCAACTTCAGTACCGGTTTCTGCTCAAGGGTCAGATTTAAGTGGGTTTAACTTGTCAATGACTGCACCCCTTTCATCAAATTCTGGCCCAGTCTTACCTAACTCTACAGTGTCAATGGGAAGTGAACCCTTAGTATCATCTGCTAATCCACCAGCATCAATTTTAAGTGGTTCTCATCTCATGTCAAACTCAGGACCAACTCAGCAGCCTTCAACATCTAATTCATTCTCATCATTGAAGTCCATGGCTGCTCAAGCAGTGGCGACAGCTGGATTGAACAATTCTATCTCGACGCCAACGGACTACAGCACAGAAAGTAGAGGTCTGTTTGACTCAAGCAGTAGTCAAACAACAGACAAGACCAAAGCATCGCAAGAGACAAATACTGCGCATCTCCAGCCATTACTGGGTGTGGCTCCATTAGGTCCTGTGCCCCTAAACAAGGAGAGGTGTTATCAGCTGGCTATGTTGGAAACTGCATATCACCACCTACCTCTTCCAGCTGATTCGGAGAAAGTCAGACCTTATTTACAGCGCAGCCCTTACCCAACACCAGCgcatcatcatcaacatcCCCCACAACATGTAGACTCGATAGAATTCTTCCAAAGATTGTCCACGGAGACgctcttctttattttttactacCAAGAGTTAATACTCGAACGTGAGGCTCCCGCGGTCGGATTGGGAACGAGAGCACAGTACTTAGCAGCAAAGGCTTTGAAGAAGCAGTCATGGAGATTTCACACCAAGTACATGATGTGGTTTCAGAGACACGAAGAACCTAAGGCAATCACGGATGAATATGAACAAGGCACCTACATCTATTTTGACTACGAAAAATGgggtcaaaggaaaaaagaaggctTTACTTTTGAGTATAGATACTTGGAAGACAAAGAACTCCCTTAGAAGTACTTAGGAACGGTTAATAACCAGGCATGGTCTAAATCGCGGGACACTAACAAAGTTCACCCGAGAGCACGAGCAACAAAGGGTCCATGAAGAGCACAAGGCACATGGGCCTAGTGCTAGCAAACAGAACGTGGAAATGAGAGAAATCAAAACGTACATTTTGTATGAAGCGCTTGACtcgtgcattttttttaccgGCTGTGTCTACGTTGGGTTAGTTTCAAGGGATTGACGCAGCTGATCTTGACAGCTTCGTACGACCTCGTCTGTTTTATGAACACTGGCTTGTTTATAATTGTAAATATGAATGCTAGCTCTAACAATTCcgttcattaaaaaattgaagcatAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04153 all species →	NOT2_3_5_C	NOT2/NOT3/NOT5 C-terminal	Domain	Interproscan
PF04065 all species →	Not3	Not1 N-terminal domain, CCR4-Not complex component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038635 all species →	Homologous_superfamily	CCR4-NOT complex subunit 2/3/5, C-terminal domain superfamily	Interproscan
IPR012270 all species →	Family	CCR4-NOT complex, subunit 3/ 5	Interproscan
IPR007282 all species →	Domain	NOT2/NOT3/NOT5, C-terminal	Interproscan
IPR007207 all species →	Domain	CCR4-Not complex component, Not N-terminal domain	Interproscan
IPR040168 all species →	Family	Not2/Not3/Not5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23326 all species →	CCR4 NOT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0030015 all species →	Cellular Component	CCR4-NOT core complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:2000036 all species →	Biological Process	regulation of stem cell population maintenance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12580	CNOT3, NOT3; CCR4-NOT transcription complex subunit 3	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.