Gene detail

Detailed information of RMX58122.1 in Pocillopora damicornis

Genomic Location: SczhEnG_538:58532...67253
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00000014

TCGAGGGCTCATAAGAAGAGAGGGAAATTTGGAACAACTGTATACGAGATGAAAATCGTTTGTGAAAAGGCTTGATAATTAGATATTGAGGaattaaatctttctttggTTCTTCTGAACTGAACGGCTAAAGTTCGCTCCTTTTTGTGTCAAAATGGAGGGTCTTTCTGAATCATTTGCGGCCAGTTTCACTGTTTCCTCTGACCCAAACGACACCGCAGCGCCTCATCCGAGAACTGACTTACATGTACTTGCCATCAGGATGACGCAGTATAAAATGAAGCCCAGCAACACCCCAGATCAGTTTTTACGTAGAAAAAGAATGTTGGAGGAGCAGAAAAGACACAGGCGAGATTATGTCAACTATGCAAGAAAACTGGTGGAAGGATCTTTAGAAATTGAAGATGTTGAGATAGAGGAGATGGAGTTTATTGAGGAGAGTGACAAGAATGGCAGGAGAAGGCataaaaagaagtttaatCCTTATGCATATCAGTTGATGTTATCAGAGTGGCTTGTTGATATTCCTGATGATTTGAAGGAGGACTGGTTGATGGTGATTTGTCCAGTGGGCAAAAGAAACCTTGTTATTGCTGCAAATGGATATACTGCCGCATACACTAAAAGTGGCTACAGAGTGAATAAGTTTTCCTCGTTGCTGCCAGGCGGAAGTCCAAAAACTCTCAAACCTGGAGATTACACCATCTTGGACTGTATCTTCAATGAACTCACAAACACATTCCATGTGTTGGATGTTATGACCTGGAGAGGTCATCCTGTGTATGACAGTGAGACAAAGCTTCAGGAAGAGCCATTAGTGGCACAAGTGTCAGGTGACAACCCATACAGGTTTGTCAGTTTGCATCATCATCCTTGTCATGCCAGTTCCATTAATGAAGCTTTGAGCAGTGTCACATCAGTCAAtgaggTCGATGGTTTGTTGTTCTTTCACAAGAGGACGCATTACACTTGCGGGAGAACACCGCTGGTTGGCTGGTTAAAACCGTACATGCTTCCTGAAATATTGGGGCTCCCTGTGCCAGATACATTCATGGCAGGGGTTCCTGCGGTAAACAAACTCACTTTACTGAAGTCGAACAAGGAGTTACGAGACAGCGACGAGGAAAAGAGGTTGGCGAGAGAGAACTGTGTGTTTGAGGAGAAAATGGACACTCAGTCGTccctgaaaacaaagagaaaacaggGACGAAAATATGCTTCTGAAACTGGTGCAGGAATGGAGGTGGAGGgagaatcaaaagaaaatatacaaCACGGGGACAAGAATGAAAAGATGGAAGTTTCGAAAAGAACTTCTAGTCGAAGAAGGCGTAAGGAAGGCGACGATGATATGGATGTGAGTCAGACTGACGAAACAATATCTTGAAGTCGTTAAGACCTCTTAATTGCAGGCATAACTATTAATGAAGTAGGCTTACTCGGCGATCCTTTTGAGTGCAAATCATATCGTTTCTAAACAAACGGACGAGACCAGGAACCGGTTCCTCAGTGGCTGAAACAAATCTAGTGAAGCCTGAGCCTCCCCAGTCCTCCCATAGTTATACTTCATGTTTTAGTATGGATCGTTTAACGTGGCCATTTTGTTGCTTCGTCTTTTTCCAAACAGGAActatttcttatGTACGTCGGGCTTTGCTTGTCCCGCGAACACAATGACGGAAAAGTACTGCTGCAATTTTCTCTCCTATAACGAAGAAGTCATTTCAGCTCGATAAGCAACAACCGTCTGCTTGTCTGAGCAGACTGATTTACTTGTCGAAGTGAAAATATAATAACTGATACAGTGAGCATTGTTGAATGTATTTCGTCTATCATGGGCAGGGGGTAATAAATCAGACCGTTGAACTTCTTAGCTATGTTTCAGCAATGGCTGAACTTCTTGGTTGTGCATCAGGAATGGTTGAAACAGCCATCCATCCTTTTTCTCCTTCGTGGCTCTCAACTCTCTTTAAAGGGGCTTTCCAAGAAGCCAAATTTTTCGCACACTCTTCTGCCTTTTTCACTTCTTCCTCGGCTTCCTTCTCTCTTCCAAGATAACGCAAGACAATCGACAAGGTTTGGTATGTGTGAATCAGCTCTTCGTGTGTGTCTAATACTTCCTCTTGTAATTTAGCAGCCTCTTTCAGGTAATCAAGGGCACTTTGGTAATCTCCCTTCGCGCTAAACGCCTCTCCCAGATCATAAAGAGACTTTGCAGTTTCCTGATGTTGCCCCAGCAGTTGCCGTCGGAGGTTTACTGATGTGCTGCTGTATTTGATGGCGCCGGTGTAATCACCCAAAGCGTAGTAACTGTTGCCAATCCAGTTAAGTGTTGTTGCTGTGAAAGGATGATCTCCGAGGTTCTCTTTATAAATAGGAAGCACAGAATCGAGTCTTGTTTGAATTGCAAGCAAGTGGTTCCGTTGAACCATTTGAGAAGctgcaaaaggaaagaaaaacgcAAACTTAAATGGCACATTGCTGTACTCATCTCCCATTTCTTTAGGTTTTTCTGGCAGCAGAACTATTTTAGTTAGGACTGTATAAACTTTGCGAATAATAGTTACAATGAAAATCGTCGCGCAAACACGAGCTTCATATCAGATCCggcttttaaaacattcagCTTACAAGTCATGTTATTTGAAGAAAGTAAAGGTGATACTTGGCTTCTGCAAAGTTTCAATGCATCTCGAAACTTTGAGGTGGTGTGGAAAACACGTGGTGAAGGtgacatttcacttttttttactctcaaaAGTTAAAGTCTGGAAAATTCCTAGAGAGGGGAAGTTTCTTAACACTGTGGTGCTATGTCGGTGAGGGAGTTTAACATGATA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003145 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11538 all species →	Snurportin1	Snurportin1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047857 all species →	Domain	Snurportin-1, m3G cap-binding domain	Interproscan
IPR017336 all species →	Family	Snurportin-1	Interproscan
IPR024721 all species →	Domain	Snurportin-1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13403 all species →	SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0061015 all species →	Biological Process	snRNA import into nucleus	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13151	SNUPN, RNUT1; snurportin-1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.