Genomic Location: SczhEnG_538:1825818...1832830
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families
| CDS |
| pdam_00000203 |
| Transcript |
| rna-pdam_00000203 |
| Protein |
| RMX58150.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006365 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00227 all species → | Proteasome | Proteasome subunit | Domain | Interproscan |
| PF10584 all species → | Proteasome_A_N | Proteasome subunit A N-terminal signature | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000426 all species → | Domain | Proteasome alpha-subunit, N-terminal domain | Interproscan |
| IPR001353 all species → | Family | Proteasome, subunit alpha/beta | Interproscan |
| IPR035144 all species → | Family | Proteasome subunit alpha 1 | Interproscan |
| IPR023332 all species → | Family | Proteasome alpha-type subunit | Interproscan |
| IPR029055 all species → | Homologous_superfamily | Nucleophile aminohydrolases, N-terminal | Interproscan |
| IPR050115 all species → | Family | Proteasome subunit alpha | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11599 all species → | PROTEASOME SUBUNIT ALPHA/BETA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0019773 all species → | Cellular Component | proteasome core complex, alpha-subunit complex | Interproscan |
| GO:0005839 all species → | Cellular Component | proteasome core complex | Interproscan |
| GO:0051603 all species → | Biological Process | proteolysis involved in protein catabolic process | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0010498 all species → | Biological Process | proteasomal protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02725 | PSMA1; 20S proteasome subunit alpha 6 | EC:3.4.25.1 | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Pocillopora damicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Pocillopora damicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
