Gene detail

Detailed information of RMX58294.1 in Pocillopora damicornis

Genomic Location: SczhEnG_538:2082313...2090476
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00000234

ATGCGGTGTGCAAATCATGTACGAGATATGTAAAATCTAGACCATAATGCTCATTTAAATACAACTTAGTACAAGTACTTTGATTGGTGAATACACTCTCCAATGCCGTTTGCCCAATCACAACTATCGTTACGTCTCTCGCAGTACTAGTTCAATGGCGGCTCGTGGAGAGTGTTCAAATCTGATATCCATAAAACAGTTTAAGAAAGAGTTTATGGAGTTTCTTGAACCGGCTCaatatgaaaggaaaaagtttgaaatcgACATGACCCAAATGGCTAAGGAAATGGACGTACCAATGGATGTAGTGACAGACTTAAGCGAAGTATGCAGTTCAAGCAATTTAAAGTGCCCAGCAGAAACAGAAGGCTTGGAATCTATCGATATTTTTGGGAATTCCATTCCTGATGGAGTAGAGCTTGAATCCTTAAAGCTTCTGAAAGAGAGAAGAGGAAGATTAACTGCTCATAGAAAAGTTGTGAATTATCTTGTAAAGGAAATACAGCCCTCTAAAGAGCCACAAGCATTTCAGGAAATTAAGACAAATGAGGTTATCTTGTCAGTTGCAATTTGTCATCCCCGTAAGCAAAACAAGGTTCAAGAATTCCACGTGCTGGGAAGTCAGTGTCTCACAGAATTACGTGACAAGATATTTTGTACTGCTGATGAAATGATACTTGGGGATCACAGCAATAATCCAGACCaattatcacaaaaaagaGCTAAGgATGTGTTCAAGTCTGGGTTCTTTTTCATAGAGGGAGTGTTTTACAATGACAAACGTGATCCACTTTCAAAGGATTACAGCAAGGTGATCACTGAGTGGGCCAAAGATCCACAAAGAAGAAAGTGTCCTGGACTTGGCTTATTTACCAGTAAGCGAATGGAGGATGTAATATTTGAAGACCTGAAAGTCAAATTAGGATACCCATATCTATATTGCCATCAAGGAAACTGTGAACATGTTATCATGTTTACTGATCTTAGacTGATGAATGTGGAAGATAATCCGAACCTGAATGAATACCCAGTTCAAGTATTCAAACATAGAGGAAAGCGAATCAGGTGCCGCGTGTGTGACGTTTACACTGCAAAatgGGTGACAGTGAATGATGTGTTAGCGTACGAAGaaccttgttttttctgtGCCACTTGTTTTAAAGGACTTCATTACTCACACAGCGGAGAAAAAATCTGCGATTTTCAGGCCTATCCAGTGGTTGGGGACTTTGACTGGTAATTCAATGTTAGAACTTgctcaaagtgaaaaagcaCACAGAGAAAAGGCACACGAAGCACAATTGGAAAAGCCAACTCGAAAATGTACATCCTTACCTGTGATCCCTGGCCAACGAAGAGCAAAACCCATGAACCATTTCTGTTGATGGCCAATATTTTGTCAGAGGCATTTCTTTGTGAAGGCATAAAACCACGTAAAGAACAGCAATATGTTACGAAAGTTATCCGTTTTAGAAATAGAGATTCCCAACGCTATTCAAAATCATTcaggttgaaatttttgttatggTGATTCCATTTCTCGAAAACAATCGGGGcatctgagtttatcGGATACGTTCgatggaaaaaaggaagatcCGGATTAACgtgacaattttattttcagtttcaattcgTTAATTTTGTCTGTGTTTTAAGTAAATTGAATAAGTATTTGAATAGTTAAGTAGCGTCTGTGACGACTTAAAATTTCCCTTTCCATCCATGTTATACAACATCCTATTTTCGAAATCTAGAGAGATCGCCTCATTTATTGCGGTTCGCGTCGCCGAAGGCGCCATGGGCGCAAGCATTTCTACCCAAAAGATCTCTGAAGAAGATCGGTTGAAACGGCAAAACTTACAGAATGAACTTTGCAAGATGCAACACAGTTTGCGAGTGACGGCAGCTGCTCATTACTTATCTTCAGAGCACTATAAAAGCCTGGATACAAAGCTTCAGTTCGCGTCAGTGATCTTGGGAAGTTTTGGGACCGCGGCAAGTGTGGCGTCTAAATTGGCCTGGAAAATGATGGTTTCAAACAGTCCTCGTATCGCACCGATCGTAGTTGCGACTTCCACAACTTCAGTACTCTTCACAGCTGTTGTGAATATACCAAATGTTCAAAATGCGCCGGCTAATTTGTACAAGGCTCACTTTAAGTCTGGTATTCAATGCCAGTACCTCGAGAAGCGAGCGAAGTTTCTGTCGGAAATGGAAGTGTGGGATACAAAGATTTCTTGGCAAACTCTTGCCAGCAAATACGATGCTTTGCTCAAGGAGAAGACAGAAGTGAACAGCCAAATGCAATCGGAGTACTGGGCTTACCGCAaggcgttaaaaaaaaacgaggaaaaacaactggaaaaaaagagaaaagaggcTTTTTACCAGCAACCAGAAGGAACTCAACCGTTACATCATGTTAGTGCTgaatagttttgaaagtttcagttttgcgTGTCATCAGAGTTGGAAATAAAAGGATAGAACGTTCCCCTCAGGGtataattttaacatttccGGATAGAAACTGCGATCGACCATGCGGTATTTTTGTTTCGATTATTTAGATATGaactaaaattttactttttgttgtcGCTTTGTGTACCGACAGAAGCTTTACGTGAATATCGGTCATCGTGTCACAGCACAAGATATATGCAATTTACAATAGACCACTGTTGTAAACATTATTGTAATTAAACCTTTTACATAGACTTAGAgcctatttcaaaacaaaagatgcgATAGTTTAGTTGTGTATAAACCTAGGCATTATGCTACTTCctgtttcaagaatttaattttttaaaatatcactgCCGTGATGGTATGCTAGGAGATCTTTCCAGTTCACTATGCTACCATTAAAGTTCTTAATAATAACTTTTGATCCTTAGTTCTATCTTTGGATTCGTAATTAAAAGTTGGATCCGTATGTTGTAATAACTTTGGATTTGTATTTGGATTGTTAAAGAAGTTTGCTCCTACACACATAAAAAGATTTATCTTAactaatgaaaaagtaaatatgaaACTGTGACA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12251 all species →	SNAPC3	snRNA-activating protein complex (SNAPc), subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022042 all species →	Family	snRNA-activating protein complex, subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13421 all species →	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006 all species →	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0001046 all species →	Molecular Function	core promoter sequence-specific DNA binding	Interproscan
GO:0003681 all species →	Molecular Function	bent DNA binding	Interproscan
GO:0019185 all species →	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0042795 all species →	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796 all species →	Biological Process	snRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15210	SNAPC3; snRNA-activating protein complex subunit 3	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.