Gene detail

Detailed information of RMX58407.1 in Pocillopora damicornis

Genomic Location: SczhEnG_527:87492...101827
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00020644

GCCAGGTTCAATCGCTGGCTCAATATTTTCCGAAGAAACCTCGAACAACGAAGATTCTCCGAAGACTTTCGTCAGAGTTACAGCAGCTGCAAAGGAAGTCATCCCCAAGCCATGCAGCGCTCCGTCGGTCAATTAAGTGGAATCGCGTCTGTATTTTTGCGTGGATTTCGTTCTTCTGCGTTTGCAGCAATGCCGATCAagATTGGTGACAAGCTTCCTTCTGTTCAAGTCATGGAGGGAACTCCTAAAGACAAAGTCAATGTGGCCACTTTGttctcaggaaaaaaaggggTGCTATTTGCTGTACCAGGTGCCTTTACTCCAGGTTGCTCTAAGACTCATCTTCCAGGATATgttgaagattttgaaaaatttaagGAAAAAGGAGTGGAGGTTGTTGCCTGTATCTCAGTTAATGATCCATTTGTAATGGCAGCTTGGGGAGAGGCACACAAATGTGATGGCaagatCCGCATGTTGGCTGACACACAAGcttcGTTCCTGGGTGTGATGGCTGTAACTGTGGACAGGTTCTTAGCTGTTTATCTTCATCTCAGATACCAGCAACTTGTGACGCACAAGCGTATTGTTGCCGTGGTGACCTCAATATGGGTGTTCAGTGCATTTGCTTCTTTTATAAGATTAAGTGGTGTGCGTTTTATTCAGCCCGTAATCCAGTACATCGGTATTCTTCTTGGTCTTGTCGTGATCACAGGAGTTTACATCAAGCTTTATTTCcattttaaggccaacttttttgaaaacaagattCTGGATATGGAAATAGCAACAGCAGGTGGCCTCATTCGTAGGTGTTTTGGCCTTCACCGAAATGGAAGTTATCAGTtctttgttagattttttgttttggtttatttttatattcttcCTTCGGAAGCTGTTGATATGGAGCTTGACGCGAGGCCATTTCTTGGAAATGTACGGTCAAAGAGATATGTGATGGTGATCGAAGATGGACTGGTGACAGCGCTCAACGTAGAGCCTGATGGTACTGGTCTGAGTTGCAGTCTGGCCAACAGCATTCTGAGTGCATTGTAGTTTGTATTCCAAACTGCGATACGGAAGGAGTAGAATCAGGATTGGATCAATCGTGGGAACATGTCATCTATTCGTTTCttcattgtttacaaaaaatggAGCATGCCTTAAAACAGTGGACTTAAATGTGAGATGTTAATAATAAGTCAAGATAAGAATAATCTTCATAATTTAATGTATTAGCAGTTTAGCAGGAAGTAATGGTGAGTTTATGAAAAGTTGTGTACTACAGAAGTGAATAAAGGACATGGTTCCATTGATTTACATTGGGCTTCAATACCAATCATTTTCTGTAGCTCGTCATTTTGAGGGTCATTCCTCTTGGTTTTTCCGTACGTTAACATTCCGATGACATAAAGGTTCAAATAATACCCAGAGTTCAACACTACGCTGTGTTGTCTGTACTTCCCAACAtcgagccaaatattttcttgtccGGCCCTCCCTCCAGGTCAATAAGTACTtatcattttccttaattaATCTAccactttacaatttttcctctATGTCTATTTGCTCATCCTTATTCACTAGTTTTAACCTTTCATAAGTAATAACGTGTCTCTATCTCGCTGCCAATTGACGCTAccgaaattatttttaaaactaattactCAAGAGACACATATCACCAAAATCCatttcaattacaaaaaattcagTCTGGTCTGGGCTGTTTGTGATTTTCACGTCCATGTTATTATACGCAGGAAAATTCATAGAGAATTCATGACAGCTGTGATAAACTTGACTATTGCAAAGGGAAATTCCACTGCTCCGTCACATGTTTTCCTCCACGTTTACGTGTCGACTGGTTGAACTTTGACGGTGTTTTTTTCGTGTTTACCATTTAAATGTTAGAAATCTTTACACAAAGGCTCCATGAAGCATAACGCTTCTCTCCCTTCGTAGagaaaggaatatttaaaaatgtgcGAAATTTCGTAGAACAGGGATTCAGCTCGTACGAGACATGGATTCAatgaaacgaaataaaaatagttgccttctttctttttctcgctAAATTTAAATCTTTACTATGATTATACGATTGCAGAAGTACGTTGTTATTATAAATACATACTAAGTATAGAGCAGATATGCAAGTGTCTGAGATGAACTATCAAACTCCAGCACTCATTCGCAATGGGTTTTTTCTTAGTGCTTGATTTAGTTCCTTGACCTCTATGTTTCGCTGCGGTTATCTGGTTCTGATTGGTCACGAGGCAATAAGTGGTAAAACCAGTTTAAAAAGACATGTTCTGCCGGTGTGAATTGGGTAGTAGTCATAGGGCCGCGAGAAAATCAGTGTTTTTACCActgtaaaatttaaccctCAGTACATAAAGCCCCTACTTACTCACGATTTATACGATATGGTTGCGTTTGATAGTTGTGCTTTTTGCGTCACAATGAGCTGTGGTAaacctaagagtgaccagcatctaatttctccttacaatgcTGAATCATCTAGTAGGctcataagaataaagaaagtgatcaccaacctaagaGACTTTGATTATTAAATGAATCTTCCTTGTCggtagaaaatgaaatgtgttaaaaacagtatggagaacattgatactgatgtcagggtgtaaagcACTAAAATGGTGATTTACGGATTATTGAGATCATATTTCCTTCTTAGTTCGTCTGTCTTGTTGGAGGGGGACCCGGGTTTCAGTCGGATACCCTTAGGGTGTTTCTTCTTGGACGGTTCCGTAGGTTCCAGGGGCTCGTATCCGGCTGCCCGCATACAGCAACATATCAACCAAATTATGAGGTAAACAATGATCGGGATGAGAATTATGGCTAATATAGGAAGGAGAACCCATAACAGATCATTTGCCATCGGGCATTTCTTGTGATGCCAATCTTCTTTGGGACAATCGTCTGGTTCGAAATTAACCGACGGGAACCGTGCACATTTTTCCGTCGATGAGCACCAGTAGCACATGGCGTCTTGATGAAGACACTTTTTACATGATCGTTTCCGTTCGTGGCAGGGAATTACTccaaTTGGATAAATACATTGGCCTTTGTACGCTGTTTTCTCTTCGGGGCAAGACTGCTCTGTTGTTGAAGAATTGTAGTACGCTTGGCAAGTTTGTTTAGATTGGCACCAGACACAAAACTCTCTCGCAGTACAGTTCTCGCAACCTCCTTGGCTGCCACAGAACGCGGTGACGTTCATTGTTACCACACTGCTATTCCCGGCTGCCGAGTCATCTGCCATAACATTGTTTACGGCACTGAGTTCATCCAAAGATTGATCATAGTATGCCATTACAGAccctctttttctgttatcaGCTGTTTGAGCACTGCATTCTGTCCGTCTGTATTCGCGCGGGCAATTTTTGCTTCCTTGCGACACACACTGGCTTGTAAGTGATTCATCACTGCACCACTCACAATTTCCTTCTTTAGAAAGACATTCCTGGCAGCTTGGTTGACTTTGAGAGCAACCTTGATCGTCCAATGCGGAATCGTAGATGTTGTGTTTACGCCAAGGAAGCTCACTACAATGGTACACTTCAACCACCACAAACAGCAATATGATTTTTATCCCTTTCATTCTGTCAATATTCTTGGCGGGAAGAGACACAAGATGTACTCCTTCCCGCAATATAGTTCTTTCCTCGGATGAATTTTAGCGTAAACAAGCCGTTCTCTTCATGTTTTATCACGCCGTCTTAGAAATGTTGGCTGCCCACTCTAATCAACGCTCCAATACTActaaacaaatgcaaaagGCGCAATTTCT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08534 all species →	Redoxin	Redoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR013740 all species →	Domain	Redoxin	Interproscan
IPR037944 all species →	Family	Peroxiredoxin-5-like	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10430 all species →	PEROXIREDOXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0008379 all species →	Molecular Function	thioredoxin peroxidase activity	Interproscan
GO:0034599 all species →	Biological Process	cellular response to oxidative stress	Interproscan
GO:0042744 all species →	Biological Process	hydrogen peroxide catabolic process	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX58407.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.