Gene detail

Detailed information of RMX58792.1 in Pocillopora damicornis

Genomic Location: SczhEnG_450:77745...83013
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00021879

TAAGTGCTTACATCTGACAACCCAGTTATGTTGTCTAAAGGCTCGCTGCTGTATGGCGCTGTACTTTGCGGCATAGCCCTGATTCTTAGCCAAAAGAAAGCACAGAGCCATCCCCAGTGCTTGGATTTTAGAGCGCCCTTTAAAGTAGCAAAACAGCTCTCTTTCTGCCCGCAAAACTACTCGGAATATGGCTGTTGCACTGTAGACCGCGATCAAGGGATTTCGAACGTCTATAAGAGATTGGTGACCCGATTTTCACTGGATAGCAAGCCAAAATGCGCTAACCTGGTAAAAACAGTGCTTTGCCTCGAATGTCATCAATATGCAGCCCATATTTTTGAGGCAGAAGGTAATAAAAAGTTCGATTCGACGACTGCAGCCCCAGGATTATGCTCTAATTTTTGCAAGACTTTTTACCAAGAGTGTAATGACGTAGCGACATATTTAGTGTCAAACGGCAGATGGAAACTTCGATCTACGCCTGAAAGTTCTTCACCGTTAACCGAGAAATCGTTCTGCGACGGACTACAGCTGTCAGACGCAGACTACTGCTACCCGCATGTACAAAGAGTGGATCGTGAAATCCTTTCGAGAAAATACAACTTCGATTCCAACCGAAACTGTTTGTGTGTCGAGGAGGTGGCGCGTGGTTTACGAAATCCTCTGGCTGCGGTGCACGCAAATGACAAGTCTGGAAGACTTTTTATCGCCGAACAGCCAGGCCTAATACGCATCATATTAGCTGAGGGAAAATTACTGCAGCAGCCATTTTTAGACATCACTGACAGAGTGTTAACATCAGGTTCGTACGGCGATGAGCGTGGGTTTCTAAGCATTGTTTTCCATCCAGCGTTTAGGAATAACAACAGGTTCTTTGTGTATTACTCAACTCGAATGGGTAGAAAATCTGGGAGCAGGAAAAACTCCAAAGCTCCTTTTAGAGCGTTTGATCATAGAACGGTTTTGAGTGAATTTAGGGCTTCGGTTTACAATCGTAACAGAGCACTTCGAAGGTCAGAAAAAGTAATTATGGAAATCGAACAACCTGCTGACAATCACAACGGAGGGACGCTGTTTTTTGGATCCGATGGTCTACTTTATTTGACGATTGGAGATGGCGGGCGAGGTGGAGATCCCTTTGGAAAGATTGGCAATGGTTTAAACAGatCGACTCTCTTGGGAAGTGTCATTCGAATTGATGTAGATGCACGGCGACAAAGCTACAAGATTCCCCCGGATAACCCGTTCATAGGTATCCGTGGGGTTCGCCCGGAGATTTACGCTTACGGAACTCGTAACATGTGGCGTTGCTCGGTGGACAGAGGAGATCGCAAGACGGGAGAAGGAAAAGGCAGAATATTCTGCGGGGACGTGGGTCAGAATAAATACGAGGAGATCGATATCATTACGAAAGGTGGAAATTTTGGATGGCGAGGTTTTGAGGGATTTGAATGCTACGACAAAAGCCTTTGCAGGTCTCCTTTAGTAAGTGGTAGTATTCCACCTATTTTCGCCTACAACCATTCTGTTGGCAAATCCATTGTGGGTGGCCATGTTTATCGAGGCTGCAAAAACCCGGATCTAAGTGGAAAGTATATATTTGGAGACACTGTAACCTCCCGTCTTTTCGCGCTGACGGAGGACAAGACCACAGGGAAATGGAAAGATGAGGAGCTCTGCTTTGGGGATGACAAATATTGCACTGATAATCTCAGCGGAGAATTTGAGCGGTTTATCTTATCATTCGGGGAGGACGAGCATGgTGAGCTTTACTTTCTTTCGACAAGCCGTCCTAGCAGCACAAATAGGGAAGGCAAAGTTTATCGTATAGTTGATCCCGGAAGGAGAGGTGATCCTGCAGAGTGCTCCAACAGTCGTCCCGCCACATCCAGCTGTAAGGATCATCGTCGCAGCAAGTATTTCTGTGAATATTACAAATCTCGTAACAAGTGTAATGTATACAAACCATACTTCAAGAAAAAGTGCAAGAAAACTTGCGGTTTTTGCTAACATCGCACGCAGATATTTTTAAAGCGCCTACCCGCACTCCTCCAtctgtttaaaatattgaaatggaGGATTTATCCTTGACAAGAGGTTAGATGgtggttttaaaatttcttcaaataataAGCGATAAGTTGTTAATCGCAGGTTGATTGCAATAAAATTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF07995 all species →	GSDH	Glucose / Sorbosone dehydrogenase	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR012938 all species →	Domain	Glucose/Sorbosone dehydrogenase	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR011041 all species →	Homologous_superfamily	Soluble quinoprotein glucose/sorbosone dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19328 all species →	HEDGEHOG-INTERACTING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for RMX58792.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25557	HHIPL; HHIP-like protein	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.