Gene detail

Detailed information of RMX59601.1 in Pocillopora damicornis

Genomic Location: SczhEnG_310:279084...288103
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00003620

ACTACTGAAAATGTTGGCTGTAAGACTAAAGTGGTGTTTGTGAATTGTAACTGATCAATCCTTTTCCCGACTTCCAGATATATGTACAGTGTAGGTACTGTTCATGTTATTCATGTCGCTGAACGTCACATTATTAATGGCAGTGCTTGTCGTAGCCACTCGCACACAAGATTGCTCTATGCGATAGGTTGCAACTGCAATGTTCAAATCATTTACTTTAAGACTGtggtgaaaattatttcagatgCTCTTTGCTCGAGTCTGAGTGACGCAGTCAGGATGGGAGCACAAGATAAAGCGGCCGAGCTCATTAAAAAGTtggcaaatgaaaaacttccTCTCAGCATAAAACTCAAGAATCCTGTTCTGGTGACCATGGACTCAGGAGGGGATACGATCAATTTACGGGTGGTGGTTGAAGATAAACAATCTAGTGGAGGAGCATTCACCATGAAGGTCTCGCCATCGGCGACAATAGAGAGACTGAAGCAAGAGGTTTTTGACAGATTCAGTTTTCCTGTGCAAGTTCAAAAGTGGATTATCGGCAAAAAAATACCCAAGCCCACGGAAACGCTACTTGACTTGAATGTGAGACAAACAGGGCACACAGTGTTTCTGTACCTTTTGTCCGGCAAAACGGTGGGATTAAGAAGGTCTGATACTGATCAGTTGGGACGAAGTCATGCAGCATCAGTCAGTTCAGCAGCCAGCGGCAGTGCTGGAACCAGGGTTCCTCTGGAAAGAGCTCCCGACTCACCAGAGCCGTTAAGACGTACGACAAGTACCCCCGAGTTTGTTGGTGTCAGTCAACCGTCTGGCAGATCGGAGCGGCTTCCAACAGTGCAAGACATTCCACCGTCATCATTTTCGAACCACGAACAATTAAACCTTCCGCAAACAACAACTATTGGCCAATTACTCGACATGTTCCAGCAGATGCATGGTCAAGGGGATCTCGGCAGTTCCCCCGACCCCCAGGGGTCGTTTGTGAACAATTTGCTGGCTGCACAGCTAGCAGCGGAGGAAAGGCCGCGTGATGGATGGGCCTGTGCTACGTGCACTTTTATAAACCAGCCAACGAGACCCGGATGTGAGATGTGCAGTGCTGATAGACCGCAGGGGTATGTGGTACCTGACGGGGCAAGTTTGGACGAGAGAGAGAGGCAAAGAATAGCTGAGGAAGAGAGGTCGGAAGCTTTGTTCCAACagGCTGAACGAACGCGgcaagaagaagaagagatgGCAAGAGAGAGAAACTTTACTACCCTCCTACAGACCGCACAGCAAAGTCTAATACCCAACCCGGAAGAGTTTGACTGCGGCATATGCTATGTGCCCGTGGACCCCGGAGAGGGAGTTGTACTTAGAGAATGTTTACACAGGTTTTGCagGGATTGCCTTAGTGAACACATTCGTCACGCAACAGATCCAGAAGTTCAGTGTCCTCATCAGGATGAAAACTATGCGTGTCACGCAACCATCACGGGTCAAGAAATTAAAGCACTTCTCTCGCCGGAAGATTTCAACAAGTTCTTGAACCGCAGCCTCGCCACTGCGGAAAGTCAAGCCCCCAACAGCTTTCATTGTAAAACTCCAAATTGTCAGGGGTGGTGTGTGTACGAGGACAATGTCAATACTTTCCATTGTCCAGTGTGTAATCAGCCGAACTGTTTGACGTGCAAAGTGATTCACGCCAACATGAACTGCAAAGAATATCAAGATGACCTCAAGAGAAGGGCACATAATGATGAAGCGGCCAGGAAAACGCAACAGTTTCTCGAGggtatGGTCGCTGGTGGAGAGGCGATGCATTGTCCAACATGTGAGATTATTTTAGTTAAGAAAGACGGTTGTGATTGGATGAGGTGCAGTATGTGTAGAACGGAGATATGTTGGGCCACCAGAGGACCGAGATGGGGACCTGGGgGCACTGGAGACACCTCAGGAGGTTGTAGGTGTCGTGTTGGTGGCAAGAAGTGTCATTCTAAATGCCGAAACTGTCACTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR047557 all species →	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, Rcat domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR047559 all species →	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclass	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR051628 all species →	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR047558 all species →	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, BRcat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770 all species →	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0097039 all species →	Biological Process	protein linear polyubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10630	RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.