Gene detail

Detailed information of RMX59809.1 in Pocillopora damicornis

Genomic Location: SczhEnG_276:67314...73035
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00007298

ATGGCGGTCGTCCGTCGGTGGCTGGAGTCTCGTAATACCTATTGTCAGAATGACTGGCTAGATGCTTGCATAAGTTTTGTGAAAGAAGACAATGAGGGAACGTTGTCTCCTGATCAACTGAACGAACTTGTGTATGAGCAGTGGCTGATGGCTGAAATTCAGGAATCCAGTCGTCCTTGTCTTCCAGAAGGCCTTGAGAACCAGGATATTTGTAAACTCGAGGGGACTTTCAATCTTCAGATTAGCTCAATCCTTAATGTTGGAGAATCAGCATATTCTCAAATTCAGAAACTTAAAGGTCAAGATGACCCTCAAGAGCTGAACTTCAAAGCAAATCCCTCAGAACCAAAGATAAAACCAAGTCGAATGTTACTGCTTGAAATAACAGATGGAAAACAGACTGTATTTGGAATGGAGTATCAACAGATTCCATCCCTGGCATTCAACACACCTCCTGGATCTAAAATACAAGTGAGTGGTCCCCTAACTTATAGACTTGGAGCCCTCCTACTAACGCCCAGCAATGTCAAGGTATTAGGTGGAAGTATTATGCATCTGATAGAAGAAAACTCTTACTGGAACATGCTGCATCAAGCCATAGGGCAAGATCCACCTAGAAAACCAGATGGCATAAAAACAGAAGCTATCACCATTGAAATGCCCACTGTTGATCAGATGACTGTTCAAGATAACTCAACTGTTGACATTACAACCCTAAGGGATTCAAGAACTCTGGTGAAAAGAGAAACAAACCAAAGAAATTTTAGTGCTGGGGGTCTTACCAGCAACAACAACAATCAAAGAGGGAACACAGGAAGTGAAAACCAATACAAAGGGAAATCAAAACAACAGGGACCCAATGGACCTAAAGTGGTTCAAAGTTGCAGTAGAGATCTTCAACAGTTTGGTGCTGTTGATAAATTGAAAAATGTTTGCAACGAAGAATTTTTTGATGATGACAATGACTTATTAGCAGCTGTTGCTGACAATGATTTCTTTGGGATTGAGGAGGACTTTGATATGGAACAAATAGATCAGCTTGAAAAAGACATGCAAACCTCAGCAAGCACAACAGCTAATAAAAGTATTCCAGTGAAGTTGAACATGATCCCCAGTGAAATGCTATGTCATGATGAGATCTTTGATGATGACTTTGTTGATGAAGATATACTGGCAAATGATTCAGATTCCATGGAAATAAAACCTCTTCATGAGAGAATTTCTAATGGAGAAACTATTGGACATGTGCATGCGTCAAAACAAGCAAGTATAGCATCAAACAGTTCATCAACAAAATTTAGTGATCATGCAAAGAAATCAAGCAATTTTAACAGCATTATTGCTATGTCTAGAAAATCAGATGGCAATACATGGAGACCAAGCAATGAACAATCAAATTCCTCAGACAACATGAAAAGAGGATTCATGGGTGAAAAGAATAATCCAAGACATGGATGTGTTCCTCTTGTCAAATGTGAGCCAGTCGACAAGACCAAAGATTTAGAGATGAAGAGAAATCCAACAAATAATAACAGTGATCATTTGACAACAAAAAGACTTGCATTCACCAAGTCCTCTGGTGTTCTTATCAAGAGAGAACTAGATAATGAGTTTGACAATGATGCCTCTTCTACTGAGTTTGGTGGAAATCAACACCTGAGTGCTTTTACACAAGATAGTTCTGCTCCATTTAAGTACTTATCAGATGTGTTGAAACATGCCCCTCACAATGAGAATCAGACTGTCAGAGTTAAGGCTTACATTGCAACATTGCTATCTCGTCCAAATCCCATGTCAACCCAGTGGAATATTACTGTAAAACTCAGTGATGGAACAGCAACTGTGGATGCTTTGCTGAGTGAAAAGATCTTGACACAACTATTGGAATATCCAATAGATGAATACAGACTGGAGATTCAAGAGGCTATGAAAAGCCGCAATCCAGCTCTATGCCAGAGATTACGTAAGAGAACGCAGCAATTTGAAAGGAACTTGGCTTCCGCTTCTGGCTTGATGGATATACAGTTCTCAGCGGACACGCCCTTGCCATGTGTTCTCAGCCTGATTCAGCCAACTTCCAGAGACGTTGCAGAAATGATTCGTTGCGTTAGAGTAACTTTTTAG

Transcript

rna-pdam_00007298

atggcggtcGTCCGTCGGTGGCTGGAGTCTCGTAATACCTATTGTCAGAATGACTGGCTAGATGCTTGCATAAGTTTTGTGAAAGAAGACAATGAGGGAACGTTGTCTCCTGATCAACTGAACGAACTTGTGTATGAGCAGTGGCTGATGGCTGAAATTCAGGAATCCAGTCGTCCTTGTCTTCCAGAAGGCCTTGAGAACCAGGATATTTGTAAACTCGAGGGGACTTTCAATCTTCAGATTAGCTCAATCCTTAATGTTGGAGAATCAGCATATTCTCAAATTCAGAAACTTAAAGGTCAAGATGACCCTCAAGAGCTGAACTTCAAAGCAAATCCCTCAGAACCAAAGATAAAACCAAGTCGAATGTTACTGCTTGAAATAACAGATGGAAAACAGACTGTATTTGGAATGGAGTATCAACAGATTCCATCCCTGGCATTCAACACACCTCCTGGATCTAAaATACAAGTGAGTGGTCCCCTAACTTATAGACTTGGAGCCCTCCTACTAACGCCCAGCAATGTCAAGGTATTAGGTGGAAGTATTATGCATCTGATAGAAGAAAACTCTTACTGGAACATGCTGCATCAAGCCATagggcaaGATCCACCTAGAAAACCAGATGGCATAAAAACAGAAGCTATCACCATTGAAATGCCCACTGTTGATCAGATGACTGTTCAAGATAACTCAACTGTTGACATTACAACCCTAAGGGATTCAAGAACTCTggtgaaaagagaaacaaaccaaagaaattttagtGCTGGGGGTCTTaccagcaacaacaacaatcaaagAGGGAACACAGGAAGTGAAAACCAATACAAAgggaaatcaaaacaacaggGACCCAATGGACCTAAAGTGGTTCAAAGTTGCAGTAGAGATCTTCAACAGTTTGGTGCTgttgataaattgaaaaatgtttgcaacgaagaattttttgatgatgacaatgactTATTAGCAGCTGTTGCTGACAATGATTTCTTTGGGATTGAGGAGGACTTTGATATGGAACAAATAGATCAGCTTGAAAAAGACATGCAAACCTCAGCAAGCACAACAGCTAATAAAAGTATTCCAGTGAAGTTGAACATGATCCCCAGTGAAATGCTATGTCATGATGAGATCTTTGATGATGACTTTGTTGATGAAGATATACTGGCAAATGATTCAGATTCCATGGAAATAAAACCTCTTCATGAGAGAATTTCTAATGGAGAAACTATTGGACATGTGCATGCGTCAAAACAAGCAAGTATAGCATCAAACAgttcatcaacaaaatttagtgATCATGCAAAGAAATCAAGCAATTTTAACAGCATTATTGCTATGTCTAGAAAATCAGATGGCAATACATGGAGACCAAGCAATGAACAATCAAATTCCTCAGACAACATGAAAAGAGGATTCATGGGTGAAAAGAATAATCCAAGACATGGATGTGTTCCTCTTGTCAAATGTGAGCCAGTCGACAAGACCAAAGATTTAGAGATGAAGAGAAATCCAACAAATAATAACAGTGATCATTTGACAACAAAAAGACTTGCATTCACCAAGTCCTCTGGTGTTCTTATCAAGAGAGAACTAGATAATGAGTTTGACAATGATGCCTCTTCTACTGAGTTTGGTGGAAATCAACACCTGAGTGCTTTTACACAAGATAGTTCTGCTCCATTTAAGTACTTATCAGATGTGTTGAAACATGCCCCTCACAATGAGAATCAGACTGTCAGAGTTAAGGCTTACATTGCAACATTGCTATCTCGTCCAAATCCCATGTCAACCCAGTGGAATATTACTGTAAAACTCAGTGATGGAACAGCAACTGTGGATGCTTTGCTGAGTGAAAAGATCTTGACACAACTATTGGAATATCCAATAGATGAATACAGACTGGAGATTCAAGAGGCTATGAAAAGCCGCAATCCAGCTCTATGCCAGAGATTACGTAAGAGAACGCAGCAATTTGAAAGGAACTTGGCTTCCGCTTCTGGCTTGATGGATATACAGTTCTCAGCGGACACGCCCTTGCCATGTGTTCTCAGCCTGATTCAGCCAACTTCCAGAGACGTTGCAGAAATGATTCGTTGCGTTAGAGTAACTTTTTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08585 all species →	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan
PF16099 all species →	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan
PF21000 all species →	RMI1_N_N	RMI1, N-terminal helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042470 all species →	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR044881 all species →	Homologous_superfamily	RecQ-mediated genome instability protein 1, N-terminal helical domain superfamily	Interproscan
IPR013894 all species →	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan
IPR032199 all species →	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan
IPR049363 all species →	Domain	RMI1, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790 all species →	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0031422 all species →	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10990	RMI1, BRAP75; RecQ-mediated genome instability protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.