Gene detail

Detailed information of RMX59899.1 in Pocillopora damicornis

Genomic Location: SczhEnG_254:210442...219790
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00001060

gggaattttttccttcttcttccaCAATGGCCGCCGCAGTTGTCACTGGAATAATCATAGGACTGGCTGCAATGTTGTTCAATTTCTCCGTCCATAAAATAGATGAAGGTCATGTTGGAGTTTATTATCGAGGTGGTGCATTGCTATCATCAACTAGTGGACCAGGATATCACATTATGATTCCATTCTTAACAATGTTCCGCTCAGTGCAGACTACACTGCAGActgatgaagtaaaaaatgtCCCATGTGGAACAAGTGGAGGAGTTGTCATCTATTTTGATCGTATTGAAGTTGTTAATATTCTTGAATCTTCATCagtatttgatATTGTCAGAAATTACACAGCAGATTATGATAAAGCACTGATATTTAACAAGATACATCATGAGTTGAACCAGTTTTGCAGTGCACACACCCTCCAAGAAGTTTACATAGATCTCTTTGATCAAATTGATGAGAATCTGCGTACTGCCCTACAGTTAGATTTGTTAGCCATGGCGCCTGGTTTAAGAGTTCAGgCTGTGAGAGTTACTAAGCCTAAGATACCTGAGAGCATAAGGCGTAACTATGAAGCAATGGAAGGGGAGAAGACCAAGCTGTTAATTgctcaacaaaaacaaaaagtggtTGAGAAAGAGGCAGAGACAGAGCGCAAGAAAGCTGTTATTGAGGCTGAGAAGGCTGCTCAGGTATCCAAGATTCAGTTTGATcagaaaataatggaaaaagaGAGCCTTAGGAAAATGTCAGAGATTGAGGATGGTGCCCATTTGGCTCGCATGAAGGCAAGAGCTGATGCTGAATTCTACACTGCAGTTAAACTCGCCGAGGCCAACAAGGTACACTTAGCAAGGATTACAGCCAGGGCAAAAATGACCACAGAGCTAAAACTCACACCTGAGTACCTGGAGCAGATCAAATTCAATTCCATTGCATCAAATACAAAGATATTCTTTGGTCCCAGCATCCCGAGCATTTTCCTCGACAGTAAAATACTTAGTCAGTCCTCTTCTGTAGAATCTGCCACCAAAGATCAACAGAACACGGAAGACGAAAAAGAGTTGTAGGGAGGCTCTCTATAAGGAAGACTTGACGAAGGAGTCATATATGGCAAAAGAATCACTGTAGAGCGTTGCAGTTAATCTGTGTTGGTACTGTCGTAAATGGATGGACTTATCTAATAACGAGTAATCGCTGGAGAACATTGCACTTATTCAGTGTTGGTGCTTTCGCGTGTAAACGGACCAGTTTTGTTTAGCTTTTACCGAACTCACTATCGTCACATAAAATCTCAGCCACAAGCCGGAGATTTGAAGAAGGAAGCAGCTTTTTTCAGGTTCATGCATATCAATTTGAAATGCGATTGTGAGGTAAAACCTTGAGGTTGTAAGAAAACCCCATGCTACGATCATTATAGATTTATCAGTCTGAAAGATTTTAACCAATTCTGGCGAGTTGCGATCACTCCAGCAAGTTTTTCTTAACAACTAATAAGTGCACATTCTTAGGATAATTGTTCGCCATCTAAAGCAGTTAGAATACCAATCAAAAAGAACTCAATGGAGTAGAATTTCTCCTACATCTTTTACGACAAGTGTCGTTGTCAAGTCTAACTCATCAACACTGCAAATTTTCTCCCCTATcataagtttttgtttcatcaagtaaaaaaaatgtcaccTTAGCTTTCTAGTCTTATTTTCCTAGATTCTAAAAGTACCCAATGCTGGATAAAGATCAAAGATTTCTGCGGAAGTCACAATCAATATGTTTTGGGCCACACTCAAAGTCATTTTTGCCCGAGCCGCTAGGCAAGGGTTCGAATTAGCTCTGAGAAGggcccaaaacatatttatgcccAAGAACAGAACggtattactattattatcaattttagGAGGCgtcgagaaaataaaaactggaaaaaaaaaaaatcacaaccaGTCACGGCTCTCACCATAGTTCACAAAGGTACGTGAACAATCACACGAGTCTATTTTAGACCGCAAAAATCCCTATTTTAGCTCGCAAATGTGTCACAATGCCCCATAATTAAgtgtaataattatttagaaTTCTTCGTTTTACCCCTTCTGGactttttggtttctgtgttATTAATGCTGTCTTTTGTGTGAAGAAATTACAGGGTTAACCAGGCAAGTGCACCTCATTTCTTAGGAACCTAATTAACacgaaattaaatttaaattaaaatttgaaagatttgtGGAAACTGCCTTAACGTCGTTGTATAATTTACACACTGATAATTATCGTCGGTCCATTTataaagacaattttgtttaggtcattgaattttttttgtttttgtccacTACTCTGATAAAATTGTATGCAGAAAGGGAAcctcttttgttaaaaaagccGAGGATTAGTCTGGTCTGGCTTGTAGAATGTAtcttattataaatttttctcgAGTTGCTCCTATTGTCCAGTGAAAGGCATGTGATGTTAATTTGTATTTAGTGTGAAGTAAGGGTCGTAGGGGAAAATGGGAAACGAAACGATTTCACGATTCGAAACGATTTGTCACATCAGAACCTTACAACACCAGTCTttgttgtttgtgtgtttACTGATTACTTAGAGACTTATTAGGGGTTAACAGTTATCtctaaattttggaatttttagaattacgcacgaaaatttgaaataatggtAAATTCGAATCAAAGGACAcgagaatttttaaaacgaaaaccTCGTGTGAACACGGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR033294 all species →	Family	Erlin1/2	Interproscan
IPR001107 all species →	Domain	Band 7 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15351 all species →	ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0015485 all species →	Molecular Function	cholesterol binding	Interproscan
GO:0032933 all species →	Biological Process	SREBP signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23341	ERLIN; erlin	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.