Gene detail

Detailed information of RMX59941.1 in Pocillopora damicornis

Genomic Location: SczhEnG_254:470809...478341
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00001091

GGTTGCGAAACTGTTTTTAGAACGAAAAAAGAACGTTATTCTGAACTTCGTagtacaaaacatttttgccaAGCCTCCACCAGTCCGGTTCACATTGTAATAATACCCAGTACACTTTGCGAAACGCGATACCAAGATGGCGCTTGAAGTAGAGTCTGCCGAtGTGATCCGACTGATCCAAcaatttcttaaagaaaacagtttaccAAGAACCCTTGCAACTTTGCAGGAAGAAACTGGAATTACCTTGAATACTGTTGACAGTGTAGAGAGTTTTGTAGGGGAAATAAACAATGGCCACTGGGATACAGTCCTTCAGGCAATTCAGCCACTCAAGCTACCTGACAAGAAACTTATTGACTTGTATGAACAGATTGTTTTGGAGCTCATTGAGTTGCGTGAACTGGGAGCTGCAAGGTCATTGCTGCGCCAAACAGATCCCATGATCATGTTGAAGCAACAACAGCCTGATCGATATCTTCATCTGGAAAACATGTTGGCTCGTTCTTATTTTGATCCTAGAGAGGCATACCCAGAAGGTGGTAGTAAAGAGCGAAGGAGAGCTGCAATAGCACAAGCCTTGTCAGGTGAGGTGTCAGTTGTACCACCATCTCGTTTGTTGGCACTGCTTAGTCAAGCACTTAAATGGCAGCAGTATCAAGGTCTTCTTCCACCAGGAACTACTATTGATGTTTTTCGTGGAAAAGCTGCTGTGAAAGATGAAGAGGAGGAAAAATATCCCACTCAAATGAACAGAACCATCAAGTTTGGGGCCAAATCACACCCTGAGTGTGTCAAGTTTTCTCCTGATGGGCAGTACTTGGTGACTGGGAGTGTGGATGGTTTTATTGAGGTGTGGAACTTTACAACAGGAAAGATCAGAAAGGATCTCAAGTACCAAGCTCAAGATAACTTCATGATGATGGATGactctgttttgtgtttatcCTTCAGTCGAGATAGTGAAATGTTAGCATCTGGAGGGCAAGATGGAAAGCTTAAAGTCTGGAAGTTACAAACTGGTCAGTGCCTGCGACGTTTTGAGAAGGCTCATGCTAAAGGAGTAACTTGTGTAACATTTTCTCGTGATGCGAGTCAGCTGCTGAGTGGTTCTTTTGATATGACAATAAGAATGCATGGGTTAAAATCTGGCAAGACCTTAAAGGAATTCCGTGGACATACATCGTTTGTAAATGACGCTATTTTTACAACAGATGCCCACAACATCATCAGTGCCAGTAGCGATGGAACTGTTAAGCTTTGGAATATTAAAACAACCGAGTGTCTTCACACGTTCAAGCCATCAGTAGGGAGTGTTGCCACTGATATCACAGTAAACTCTGTGCATGTGATGCCAAGAAATCCTGAACAGTTTGTGGTGTGCAACAGAACAAGCACTGTACTGGTTATGAACATGCAAGGACAGATTGTGCGTAGTTTCACCAGTGGTAAAAGAGACGGTGGTGACTTTGTGTGTTGCACCCTCTCCCCCAGGGGAGAATGGATATACTGTGTAGGGGAGGATATGGTCATGTACTGTTTTAGTGCCTCTACAGGAAAACTAGAGCAGTCTTTACAGATTCATGACAAGGATGTGATAGGTGTTGAACATCACCCTCACAACAATCTGATCTCCACCTACAGTGAAGACGGACAATTAAAACTGTGGCAACCATGagaaatacatgaaaaaaccTGTGTGTTACTCAGACATAGATTCGCCCTCTTAAAACTTACTGctaactaagaaaaaaaagaactcaaaataaaacatctaAGCCATGGAAGGATTTGCAAACTTGTTCATCAGTTTTGTAGGGCTTGAAATAGATGGAGGGcgctttattaaaaaacttttcattgaatcttgaaatgaaactgttcAATTTAACCAGGCCTAGCTTGTACTctacttttagttttttttgtgcctCTGTGAACTTGACTTTGTGTATAGAACttgcaggttttttttttcttcaagaattaGAGCCTGGATCATTCTGACttgtataaataaatttatcaaaggTGTGTTGTTCTGGTATCCATCTTGAATAATCTTTGTGAAATTTCAGTTAATCATGataattgataacaaaaaccCCAAAAGTAATAAGCAAGCAAATTCACCATACAGATGTCAATACATTCCCTAGCTAGCAGGGGTTGGGAATCAGGCTGAAGGTGGTATCCTGATATGATACTGAATTCTCTCACTaacttacaagaaaaattatcacgGTTAATCGCCAACTGAATCTTTTGAACTTGAGGGTTAAGAAGAATGTTTGGTGTTGTCACTGGCAATTTGAAGCATGGCGTGCATTCAGTTAGCAACACATTGAGAATTTTTGCAAGGGAAGAATTAAATAGAGATATTAATCTCCATGCGAAAATCCAAATCTAAAGATTTGactatttaaataatttcaagaattGGCACTTTTCTGCAACTTGGGCCATCTATGGCTTATTGCTTTTTCTCATACTTCAAGCAGATTTTAAATGTgaattttcttccagtttcaATTGACTCTttatatttttccctttgttttgattggctgataTGATCACTTTGGTTTAAGTTGGTTTTGTAACAATCCATCGTGATGCATAGTACATTGTGTTGTAAATGTACTCCTGGTTTTCTACCTAATTATAGTCAACTTCTCTCAGTAACAGCCTTGAgaagtttggtttttttaaatttactcaaACACTCTATCTTTTTTCTGGAGAAAGTATATTTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF17814 all species →	LisH_TPL	LisH-like dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR006595 all species →	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045184 all species →	Family	WD40 repeat-containing protein SMU1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22848 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13111	SMU1; WD40 repeat-containing protein SMU1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.