Gene detail

Detailed information of RMX60002.1 in Pocillopora damicornis

Genomic Location: SczhEnG_254:1254321...1268465
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00001163

ATGCGACCAATCCCGAAAACTCCTTCTTCGACGAAGACCCCGCGCAGTGCGAAGACACCAAGACGACCTACAGGCAACAAGGATCCTGTCGAGGTGTATTGCCGAATCAGACCTCTCGGCAACAATGAAGAAGAATCTTGCGTTCACATTATCAGCGATACTGTGTTAAAGCTAACAGCGCCAAAGAATTCTGCAGGATACAAGTCTGGCCACCGAATAGAGACACAACATACATTCAAAAAGATTTATGATGAGAAGACATCCCAGAAGGTGCTTTATGATAATGTGGCCATGCCCTTGGTTGATGATTTAATTCATGGTAAAAATGGTTTGATATTTGCTTATGGTATCACTGGGTCTGGTAAGACACACACCATGACAGGAATGCCCAGTGACAGTGGCTTGCTTCCAAGGTGTTTAGATGTCATCTTTAACTCTATTGGAGAATTGCAGGCTCCTAAATATGTCTTTAAACCAGACAAATCCAATGGCATTGAAATACAAACAGAACTTGAAGCAAAACTTGAGAAAGAAAAACGTGTAAAAGAAGCTGCTCTCCAGGCAGCTCAAGGAGGTAGAAACAGGAATGCTGATAATGACTTTGCTGATCTCATAAGAGTAGCTGAGACAGGAGTTATTTCTGGAGTGGATGAGGATAACAGCTATGCAGTGTTTGTGTCATACTTTGAAATATACAACAATTACATTTATGATCTGCTTGATGAGACTCCTGTGGATCCCATTTGTCCAAAACCACCAGTTTCAAAAAATCTTAGAGAAGACATGAATCGTAACATGTATGTCAGTGGTGTCACAGAAATTGAAGTCAAAAGCACAGAAGAGGCTTACAGCATATTCTGGAAAGGCCAAAAGAAAAGGCGTGTCGCCAACACAGTACTGAATCGTGAGTCCAGTAGGAGCCACAGTGTGTTTGCCATCAAACTTGTACAAGCACCATTAGATCCTGACGGTGAAGAGGTCTTGCAGGACAAAAATCAGATTGCTGTAGCCACATTATCACTGTGTGATCTAGCAGGGTCTGAGAGGACAAATAGGACCAGAGCTGGTGGAGACAGACTGCGAGAAGCAGGTAACATCAATGCATCCTTGATGACATTAAGAACTTGTATGGAGGTTCTAAGAGAGAACCAAGCAAATGCTGAGAATGGTGTTTCTCCAAAGATTGTCCCCTATAGAGACACAAAGTTGACTCATCTGTTTAAGAATTTCTTTGACGGAGAAGGAAAGGTGCGCATGGTGGTCTGTTTAAACCCCAATGCTGATGATTATGATGAGAGTGTGCATGTCATGAAATTTGCAGAAGTTACACAAGATGTTGTTATAGCCAGACCAGAGTCAGTCAGATTTGACACTGGACTAACTCCAGGAAGAAGAAGAGCAAATCAAATGTACAAGGAAGTTCTAGCAAAGGTTGAAGAAAGTAATGGTGATGGTGAAACTGTGATTGTAGCCAAGCCAGTTCATACCATGGGACCACCTTTCCCTCTATTTGAGTTGAATTCTCCAGAAGATAGCACAACACTGGTAAATTTGATGCACTACCTTCAAGATAGACAAAGACGGCGACAAACCCTTATTGATGATTTGTCAAGAAAAGAGGGAGTTTTCAGGGCTCATCTATTGGCATTGGAAAAAGAAAACAGTCAAGCAAATGGAAACGAGATGCTTCAGAAGACGGCAGAGATGTACGAACAAGACAAGAAAGAACTACGATATGAGCTGGATGATCAGAAGAAAAGAGCAGACAAAGAGAAGACCGACAAACTTAAAATGCGCCAGGCCTTGAAAGGAGTTGTGTCACAAGAAAAGGGAAAATGGGAACGGGAGTGTTCGAAACGCGTCAAGGACAAGGAAATGGAGATGCAGGCCAAAATGTGGCAGAAAGAGGAAAAACTAAGACAACTCAAGGAGATTGTGCAGAATATGAAGACGAATGACTCGGGTCCTGTTACTCGTGCTCAACTTAAAGCCGCCTCCATGCCTAGATCGAAGTCTCCACCGCCTGTTTCCAGAAAGCCTCCGATCAAATCTCGTCACAGACGATCCAAGTCTTCGGATTGTTGGATAGAGCACAAACCCTTGACTCACCTAGAAACAGGCACAGTAATGAAACCGTCGATAAAGAACAAGAAAACCGTTGCCAGGCCTGGTGAGAAGGACTTCAAAGACACTAATGCCACAAACTATGTTTTAGCCCACCAAGAGGAAGATTCTGCTGGTGAAATTGAGACTAAGTTGATCAAAGGAGACGTGTACAAGACTGTGGGAGGAGGTCACTGCATCCAGTTTACAGAGGTGGAAACTTTGAAAACAAGATCTGACGAGCTAACTAGTCCGGGACGAAAACGACACGCGTCTGACTCGATCGATGATGAGAGCCATTCCAGCTGGACTGATGTGGAAACAAGGTGTTCAACGGCAATCGAAGGCAGACCTAGGACTGGACCCAGTTATTGTCACACTGCAGCTAAGAAAAAGAAGCCCTAG

Transcript

rna-pdam_00001163

ATTCAAGAATTATTGGACCgacattttgattttcgaCTTGTTATTTGGAAACTCTGTGCCAATTTCTATGGTGGAAATCATCTGTTTTAGATAATAATGCGACCAATCCCGAAAACTCCTTCTTCGACGAAGACCCCGCGCAGTGCGAAGACACCAAGACGACCTACAGGCAACAAGGATCCTGTCGAGGTGTATTGCCGAATCAGACCTCTCGGCAACAATGAAGAAGAATCTTGCGTTCACATTATCAGCGATACTGTGTTAAAGCTAACAGCGCCAAAGAATTCTGCAGGATACAAGTCTGGCCACCGAATAGAGACACAACATACATTCAAAAAGATTTATGATGAGAAGACATCCCAGAAGGTGCTTTATGATAATGTGGCCATGCCCTTGGTTGATGATTTAATTCATGGTAAAAATGGTTTGATATTTGCTTATGGTATCACTGGGTCTGGTAAGACACACACCATGACAGGAATGCCCAGTGACAGTGGCTTGCTTCCAAGGTGTTTAGATGTCATCTTTAACTCTATTGGAGAATTGCAGGCTCCTAAATATGTCTTTAAACCAGACAAATCCAATGGCattgaaatacaaacagaACTTGAAGCAAaacttgagaaagaaaaacgtgTAAAAGAAGCTGCTCTCCAGGCAGCTCAAGGAGGTAGAAACAGGAATGCTGATAATGACTTTGCTGATCTCATAAGAGTAGCTGAGACAGGAGTTATTTCTGGAGTGGATGAGGATAACAGCTATGCAGTGTTTGTGTCATACTTTGAAATATACAACAATTACATTTATGATCTGCTTGATGAGACTCCTGTGGATCCCATTTGTCCAAAACCACCAGTTTCAAAAAATCTTAGAGAAGACATGAATCGTAACATGTATGTCAGTGGTGTCACAGAAATTGAAGTCAAAAGCACAGAAGAGGCTTACAGCATATTCTGGAAAGGCCAAAAGAAAAGGCGTGTCGCCAACACAGTACTGAATCGTGAGTCCAGTAGGAGCCACAGTGTGTTTGCCATCAAACTTGTACAAGCACCATTAGATCCTGACGGTGAAGAGGTCTTGCAGGACAAAAATCAGATTGCTGTAGCCACATTATCACTGTGTGATCTAGCAGGGTCTGAGAGGACAAATAGGACCAGAGCTGGTGGAGACAGACTGCGAGAAGCAGGTAACATCAATGCATCCTTGATGACATTAAGAACTTGTATGGAGGTTCTAAGAGAGAACCAAGCAAATGCTGAGAATGGTGTTTCTCCAAAGATTGTCCCCTATAGAGACACAAAGTTGACTCATCTGtttaagaatttctttgacGGAGAAggaaagGTGCGCATGGTGGTCTGTTTAAACCCCAATGCTGATGATTATGATGAGAGTGTGCATGTCATGAAATTTGCAGAAGTTACACAAGATGTTGTTATAGCCAGACCAGAGTCAGTCAGATTTGACACTGGACTAACTCcaggaagaagaagagCAAATCAAATGTACAAGGAAGTTCTAGCAAAGGTTGAAGAAAGTAATGGTGATGGTGAAACTGTGATTGTAGCCAAGCCAGTTCATACCATGGGACCACCTTTCCCTCTATTTGAGttgaatTCTCCAGAAGATAGCACAACACTGGTAAATTTGATGCACTACCTTCAAGATAGACAAAGACGGCGACAAACCCTTATTGATGATTTGTCAAGAAAAGAGGGAGTTTTCAGGGCTCATCTATTGGcattggaaaaagaaaacagtcaaGCAAATGGAAACGAGATGCTTCAGAAGACGGCAGAGATGTACGAACAAGACAAGAAAGAACTACGATATGAGCTGGATGATCAGAAGAAAAGAGCAGACAAAGAGAAGACCGACAAACTTAAAATGCGCCAGGCCTTGAAAGGAGTTGTGTCacaagaaaagggaaaatgggAACGGGAGTGTTCGAAACGCGTCAAGGACAAGGAAATGGAGATGCAGGCCAAAATGTGgcagaaagaggaaaaactaaGACAACTCAAGGAGATTGTGCAGaaTATGAAGACGAATGACTCGGGTCCTGTTACTCGTGCTCAACTTAAAGCCGCCTCCATGCCTAGATCGAAGTCTCCACCGCCTGTTTCCAGAAAGCCTCCGATCAAATCTCGTCACAGACGATCCAAGTCTTCGGATTGTTGGATAGAGCACAAACCCTTGACTCACCTAGAAACAGGCACAGTAATGAAACCGTCGataaagaacaagaaaaccGTTGCCAGGCCTGGTGAGAAGGACTTCAAAGACACTAATGCCACAAACTATGTTTTAGCCCACCAAGAGGAAGATTCTGCTGGTGAAATTGAGACTAAGTTGATCAAAGGAGACGTGTACAAGACTGTGGGAGGAGGTCACTGCATCCAGTTTACAGAGgtggaaactttgaaaacaagatcTGACGAGCTAACTAGTCCGGGACGaAAACGACACGCGTCTGACTCGATCGATGATGAGAGCCATTCCAGCTGGACTGATGTGGAAACAAGGtgttcAACGGCAATCGAAGGCAGACCTAGGACTGGACCCAGTTATTGTCACACTGCAGCTAAGAAAAAGAAGCCCTAGAGATGTCACTTCTGCAATGTGTCGGGTGGTTTCTTGTACAAATATTGTGCGTCCTCTGCTGTGGCGGGATCAAGACTCGAGACTGACGAGAAACATAAATTACCTTGCTAATTGATTTCGATCGTCAAACTATGATGTGGACATTTATTTGCCCATAGCTTAAAGAAATAGttttaacaaatgaaatcCCTTGTAAATGAACCCCTCCTTCGGAGCGAAAGTCAAGGATATCAAATAAAGCTTCTTTCCAACGGTCATGATAGTTGGTAATAGTTTCAACTTTCATTCGCTATCATTAACTATCATGTTTGCTTTCAAACGGCTCATGACAGTAGATGGTAGTGGTAGTTgaaactatcatcaactatcatgacCGTTTTAAGAGGCAAGTTGAGTTATACCAACGGCGctatcattttgtttctttgaatacATAGTTGACTCTTATCGATTACTGATGttccattttttaatcttttgtttccattttagtatttttttttcacttaatcCACCGATAGGTGGTCAATGTAAAAAGCCCTAGGTAATAACTAATAAATATTAGTACTGAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16540 all species →	MKLP1_Arf_bdg	Arf6-interacting domain of mitotic kinesin-like protein 1	Domain	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR038105 all species →	Homologous_superfamily	Kinesin-like protein Kif23, Arf6-interacting domain superfamily	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR032384 all species →	Domain	Kinesin-like protein Kif23, Arf6-interacting domain	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24115 all species →	KINESIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17387	KIF23; kinesin family member 23	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.