Gene detail

Detailed information of RMX60026.1 in Pocillopora damicornis

Genomic Location: SczhEnG_247:71840...91886
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00020387

ATGGCAGGATTTGAAATACGGTCTGTGGGACCCTACATTCTCGAAGGAACTTTGGGTAGAGGGCAAACCGGGCTCGTGAAACTTGGAATTAACTGTGTCACCAAGAAGAAAGTTGCAGTTAAAATTATCGACCGTACGAAGCTTAGCGAGCAAGTTTTAAGCAAGGTTGAAAGAGAAATTGCCATCATGAAGCTTATCGATCATCCTCATGTCCTTGGACTATACGATGTTTATGAGAGCAAGAAACACCTATTTTTAGTGTTAGAACATGTTTCTGGTGGTGAGCTTTTTGACCACCTGGTCAAGAGAGGAAGGCTCCCTCTGGGAGAGGCAAGAAGATTTTTTGCCCAGATGATCTCAGCTGTTGATTTTTGTCACAAGCATTGTGTTTGCCACAGAGATTTGAAGCCTGAGAACCTTCTTCTGGATAAAAAGATGAATATAAAAGTTGCAGACTTTGGAATGGCATCTTTACAGGTTGGAGATAATGCCATGCTTGAGACCAGCTGTGGGTCTCCACATTATGCTTGCCCAGAAGTCATTCGAGGTGAAAAATATGATGGTCGAAAAGCAGATGTTTGGAGCTGTGGCGTTATCCTCTATGCTCTGCTTGTTGGAGCACTTCCTTTTGATGATGAAAATTTAAGAAATCTGTTGGAGAAAGTGAAGAGGGGACATTTTAGCATCCCAGTCTTCATACCAACTGATGTTCAGGACATGATCCGAGGGATGATCAATGTAGACCCAGCGAAAAGACTTACAATGGAGGATGTGAAGAAGCATAGTTTTCTTAACAGTTTTAAAGATGAACTGCCTTTGGAGCCTCACGTTGTCGACATTGTCAAGACGGAAGTTATCCAAAGTAAAGATGAAATTGACCCTGATGTGGTACACAGTATGTCTTCCTTGGGCTGTTTCAAGAATAGAGAGAGACTTCTTCGTAACCTCTTGAAGCAAGAAAAGACGATAGAAAAAGTCATCTACTTCATGCTACTGGAGAGGAAAGAGAGATCACCGACTCACGAGGATTCTGCAGTGGCAACGATAAAGAATTTCAAAGAAATTTTGGAAGACGCCCCAAGGAAAAGAGTCGACTCCTGTGGATCTCCCAGATTACAACGACCAAGAAAAACGTCTCTGACCGCTTCACCGCCTGTTACTCCAAGGACAAGAGCTGAAACCTATTCCGGGGTCGTAAGTCCTTTGGTGCAAGTGAGTCCCCGACATCAGCCGTATACCGTGCATCAACAAGAAAGTCCCTTGTCTACCCCTCCTGAATCACCCACGCACCACGCCACCACACCACCAGGTAGCCCCTGGCGGACACGACTTGCCACTTTTAAGAACGCGATTGTGAGCTCGCCAAGATTCCACAGAAAAAAGTTATCGAATTGCGTAGAAAACAGCCCAGTGTCCGCCTCGCCTGACTCGTCTCCTGACATCGTTAAACGCTCATGGTTTGGTCATTTAGTGTTAGGACACCACAACTCGCACTCGAAACACGAGCCTTTCTTTATCGTCACAAGAGAAAAGCCTTTCAGCACTGTTAAAGCGGATGTTGTCCATGCATTTTTATCAGTCAGCCATTTAACTCACTCCGTTCTCTCACAAAACGGCTTTAAGGCAGAATACAAAAAACCAGGAGGAAAGACCATGTTTAATAAGGCAGTCCGCATATCTGTGAATATAAGTCCGACAGACCAAAGTAGAGCAGATAAAAGTTCCGTTCACACGGTCTCGATAGTTCTTGAGTCAGGACCGGTTCATCGTTTTAAGAAATTATGCGAGAAACTCCAGCTCATTCTCTTGTCGAACGCAAGACGAAGTACTAGTAACTGCCGCGCGGAAGAAGAGAACGCCGACGAAAAGTCTCTATCAGATGACAAAAGGTCTTGTTCTGAAAACTCTAAGCTACACCTCGCTCAGTTATCAGATACTGAAAGTGAAGGCGAGCTTTTGGAAGGTAAAGACAGACCCAGAAAAAACGAGAACACTTTGAAGAAGACCGTTAATGGAGGCAATAGTGAAAAGCTAGTTTGA

Transcript

rna-pdam_00020387

CAAAGCTGGAGTTTGCCAGTTTTTGTTGAGAATATCGCACAGCTTCCGAAATGATGCTGAAGTTCGGCAGATTTGGGGAGTATTTGCGTTTCTATAAATCAGTTCTGCACCAcaagtgttgaaaattttgatttgccaTGGCAGGATTTGAAATACGGTCTGTGGGACCCTACATTCTCGAAGGAACTTTGGGTAGAGGGCAAACCGGGCTCGTGAAACTTGGAATTAACTGTGTCACCAAGAAGAAAGTTGCAGTTAAAATTATCGACCGTACGAAGCTTAGCGAGCAAGTTTTAAGCAAGgttgaaagagaaattgcCATCATGAAGCTTATCGATCATCCTCATGTCCTTGGACTATACGATGTTTATGAGAGCAAGAAACACCTatttttaGTGTTAGAACATGTTTCTGGTGGTGAGCTTTTTGACCACCTGGTCAAGAGAGGAAGGCTCCCTCTGGGAGAGGCAAGAAGATTTTTTGCCCAGATGATCTCAGCTGTTGATTTTTGTCACAAGCATTGTGTTTGCCACAGAGATTTGAAGCCTGAGAACCTTCTTCTGGATAAAAAGATGAATATAAAAGTTGCAGACTTTGGAATGGCATCTTTACAGGTTGGAGATAATGCCATGCTTGAGACCAGCTGTGGGTCTCCACATTATGCTTGCCCAGAAGTCATTCGAGGTGAAAAATATGATGGTCGAAAAGCAGATGTTTGGAGCTGTGGCGTTATCCTCTATGCTCTGCTTGTTGGAGCACTTCcttttgatgatgaaaatttaagaaatctGTTGGAGAAAGTGAAGAGGGGACATTTTAGCATCCCAGTCTTCATACCAACTGATGTTCAGGACATGATCCGAGGGATGATCAATGTAGACCCAGCGAAAAGACTTACAATGGAGGATGTGAAGAAGCATAGTTTTCTTAACAGTTTTAAAGATGAACTGCCTTTGGAGCCTCACGTTGTCGACATTGTCAAGACGGAAGTTATCCAAAGTAAAGATGAAATTGACCCTGATGTGGTACACAGTATGTCTTCCTTGGGCTGTTTCAAGAATAGAGAGAGACTTCTTCGTAACCTCTTGAAGCAAGAAAAGACGATAGAAAAAGTCATCTACTTCATGCTACTGGAGAGGAAAGAGAGATCACCGACTCACGAGGATTCTGCAGTGGCAACgataaagaatttcaaagaaattttGGAAGACGCCCCAAGGAAAAGAGTCGACTCCTGTGGATCTCCCAGATTACAACGACCAAGAAAAACGTCTCTGACCGCTTCACCGCCTGTTACTCCAAGGACAAGAGCTGAAACCTATTCCGGGGTCGTAAGTCCTTTGGTGCAAGTGAGTCCCCGACATCAGCCGTATACCGTGCATCAACAAGAAAGTCCCTTGTCTACCCCTCCTGAATCACCCACGCACCACGCCACCACACCACCAGGTAGCCCCTGGCGGACACGACTTGCCACTTTTAAGAACGCGATTGTGAGCTCGCCAAGATTCCACAGAAAAAAGTTATCGAATTGCGTAGAAAACAGCCCAGTGTCCGCCTCGCCTGACTCGTCTCCTGAcaTCGTTAAACGCTCATGGTTTGGTCATTTAGTGTTAGGACACCACAACTCGCACTCGAAACACGAGCCTTTCTTTATCGTCACAAGAGAAAAGCCTTTCAGCACTGTTAAAGCGGATGTTGTCCATGCATTTTTATCAGTCAGCCATTTAACTCACTCCGTTCTCTCACAAAACGGCTTTAAGGCAGAATACAAAAAACCAGGAGGAAAGACCATGTTTAATAAGGCAGTCCGCATATCTGTGAATATAAGTCCGACAGACCAAAGTAGAGCAGATAAAAGTTCCGTTCACACGGTCTCGATAGTTCTTGAGTCAGGACCGGTTCATCGTTTTAAGAAATTATGCGAGAAACTCCAGCTCATTCTCTTGTCGAACGCAAGACGAAGTACTAGTAACTGCCGCGCGGAAGAAGAGAACGCCGACGAAAAGTCTCTATCAGATGACAAAAGGTCTTGTTCTGAAAACTCTAAGCTACACCTCGCTCAGTTATCAGATACTGAAAGTGAAGGCGAGCTTTTGGAAGGTAAAGACAGACCCAGAAAAAACGAGAACACTTTGAAGAAGACCGTTAATGGAGGCAATAGTGAAAAGctagtttgaaaaatcaaaatatggaaaagaTGGAGAGGGTATCCTTAACAAAATCGAAACCTAGACGAAAGTCAAGAAATTTGTGGGAAGAAcgaattgaagaaaaaagagaaaagaattgTCAAGAATGAAATTACACACAACCACTGAGGGTGTAGATCCACCGTAATAAATGCAGTTAGTATcaaggaattttaaaattgttgatgaAAGCGAAGAAGCGCACTCAGTATTTAACAGTCGAATGATTCAGTGAgggtgaaaattatttatttattactgtaAATCCACCACAAttgaattaagattttttatgaaaactatttcaatcttaaagggaaaaatgtaCGAAACCTACTGTCGAAAACGGACAACAGGCGGATCGAATTCAATTAGAGAAAAGGCAAGCACCTCGTAACCTTTAACATCGCAATGTTTGATGAGTGGTTCCCAATTGTAGGTGTTATACATTTCTGTGTACAGTGAAACCGCTATCAAGCGGACGCGGACACTAAAATGAATtgtatttgaataatttcGATTGTTAAAAACCTCTATTCAGCAGACATCCTCGGAACATTTTCTAGTGTCCGctacaatttattttagtgtCCGCGTCCGCTTAACAGAGGTGTCCACTGAATTGGGGTTCGttataaaaggaaatataagaCGTTTGTTTCCGAATTCGGCTTGGTGTTCGCTTACAAGAAGTGTCACTGTAATAATTTAAATCGAGATAGAACTTACTTGCCGATCCATGTGTCTGTTCTCATCACCTCTTTGTTCGGTGCAGTTTTGGAATCGTAAGGGGAAGCTAATAACGTGTACCTCTGACGATGGGTAAAagtgacgatgatgatgagtATGTTGAATACGTTGATGGTTACGACGATGATGACGTTGTTGGTGACGTGAGTGATGACTGCGATGGTAACGGTGATGCTGATGAGTGATTATTTCGTATGATGTTGACGTTGATCGTGACGTCAGTGATGACGATTATAGTAGTTATTATGATGACGTTGACGATAATGTTTATGATGTGATGATGATCATACTTCCCAATTGAGACGCATTTCTTACTGTCAGAAATGATTATGACGTTGACAATGAAGTATGATGACGACAGCTACGTCTATCAGCAGTACtgtaaaatgttacaaatgaaatttccaaGTGGATGGCTCGATAAAGTCTATCGGAGGTTTACTTAGAAGTTAACAGTACGAGATATCTTTATGATTCAATCCTAAACCCTTTCATGTtcagatgttaaaaaaaaacttggttgTCTTGTACTATCCACTTcgatttgataaaattttacaactaATTATCTCAGGACAGGTTGCGTGAAAAAGcctctttttctatttaattaGGTCTACCTAGTTTAACGAGCTTTATTTAAAAGATggcataattttgaaaaccgAAGCAGTTTGTCCCGAACTAGACTTTGTTATTCACTCGTTTTGTAAGAATTTCACACTGGTAATTCTTCGACCATTTTTCGGAGCCTTACGCAATCACCACGGCGACGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21122 all species →	KA1_BRSK	BRSK1/2 KA1 domain	Domain	Interproscan
PF21115 all species →	UBA_BRSK	BRSK1/2 UBA domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR048622 all species →	Domain	BRSK1/2-like, UBA domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24346 all species →	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0050321 all species →	Molecular Function	tau-protein kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08796	BRSK; BR serine/threonine kinase	EC:2.7.11.1	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.