Gene detail

Detailed information of RMX60067.1 in Pocillopora damicornis

Genomic Location: SczhEnG_246:298518...312603
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00004510

ATGTCAGTCAAAAGTCACGTTTCCTTACTCGCCCCAGACTTCTGTGGGCGTGGTTCTAAGGGAAAAGCCCGGATGTTCCCGGCTTCGTCTTGTGTCGTCATTGTACTCAGTCGGCCATCTGTTTTGGCTGACATGGAAGAGATCCGAAATTGGTGGGAGGTACCATCGATAGCACATTTCTGTTCGTTGTTCCGCGCCGCTTTCGGATTGACTGACTTCGAAATCGAGGATTTAGAAGATGCACTTGTCATTGATGGCTCTAATGAAGAGGGAAACAACCGATTTTTGGCCGATCTTCATGCTCGATTGTTAAGGGGATTGTATGGAATAAAGGATATAACGGCCGAGAATTTCGAGCCATATTTGTCACAAGTATTGAAAATACGCTGGGAAGATGACTTAGGAAAGAAGAACCCTCTGGCGGATAAAGAATACAGCAAACTTTCAACAAGGGAAAAAGTTGAGATTCTACACAACCTTTGTGATTTTAGACTTGATGTCGAAGATGTTCCTGAGTTACTGAAGGGCTTAGATGCAGATAGCTTGCGAGTAGAACCACTGGGATTTGACGCTGAGGCCAGAACTTACTGGTACTTCTACGGCACTAGATTATATCGTGAACAAAAGCCTGAACAGTCTGATAACAAAGTAAACAAGAAGTCTAAGAAAAAGAAAAAGATGGAGGGAAAAAATAAGAAGAAGAAAGGGAAAGTGAAGAGGAAGAAGAAAGCGAAAGGATCATCATCTGACTCAGAGCCAGAATCTGAATCAAGTCCAAGCAGTGATATGCCCAGTAGTGATTATGCTGACGATGAAGATGACGATGAGGAGCAGGAGGTAGATTCAGAAGGGAAGGAAGATGGCGAAAAGAAGCCTCGACCTTCATGGACAGTTGTGTGTTCCACAGAGGAGGAATGGCAACAGCTGGCCGAGTCATTTAAGAAAAGTAAAAACAAAGATGAGAAGATGCTTTATGAAACACTCAGTGTCGACTTTGTTCCTGAGATTGGCAAAATGATCGAAGCAAAGGATAAAGCCATGAGGAAAAAGCTGCTTATGGAAATGGCACCTCGGCGGGCATCTGACCGAATAGCTTCAAAAGCACAGTCCAGAGAGGAGGAGGAAATACAGGAGGAAAGTGAGAGACAACGGGAACGAGAAAGGGCAGCTGAAGAGAGAAGGAAGGAGGAGGAAGAAAAGCAGCGTGAAAAGCAGCAGCAAGCTGAGAAAAGACAGCAAGATTACTTACTGAAAATTCTTGAAAATGGGAAAACAACTCAAGACTTGGAAAAAGTTGGCAAAGTGAAGAAAAAAGTGCTTGGTCCAGACTCTGGGTCAGGAGGTCTTGGGTTCAATGTGTTACATTGGGCAAAGCACTGTACTCTCACAGTGCCTATGTCTACCCAGGAGTATAAATGGTGTACAGAGAGAGCCAGAAGAGCGCGTATGCGAGAAGAACGGCAATGGATGATGGCTAATGGTGAATTTGTTCCCGAGGAACTGAAATCAAGCTTGTCTAACGTAGAAGAGAGCAAAGACAGTGAAGAAGGAACCAGTACACGAACTAGTACACGATCAAAACAGTCAGGAGAGGATATCGGACTTGAAGACAGAGATGAAGACTTGTACACTGGAATGTATAAAGTTTTGGATGCTTTGAAAAAACACAATAATGCATGGCCTTTCCTGGAGCCTGTGGAGGAATCTTATGCCCCTCAATACTACGAGATCATAGAGGAACCAATGGATCTGTCAACCATTGAACAAAAGCTTGATGACAGTAAATACACCACTTTGAATGATTTCAATGCAGACATGAAGTTGATGTTTGAGAACTGTTTAGACTACAATGGCCCTGATAGTATGTACACTAAGATGGCAAACAGCCTTGAGGCAGCTTTCAATCGTCAACTGAAGAAACATTTTCCTGAAGATGATGACAACAGTGATGAGGACTTTGAAGAAGAGCTTGCACGCAAAAGCAAAAAAGACAAGAGAAAGAAAGGAGAGGCAAGCTCAGGAACTGAGATGTTTGGTAGTTCTCATCCAGGAGAGGACCACCCTTTCCCCCAACAGATGGCCCCATCTGGAATGCAGTCAATGTTTCAAAACCATATGTTACCTAACAGCATGTCAAATGGAGGCATGATGCCATCGCATCACCCTTCCAGAATGCCCTTCCCTGGTCCCCCACATTTTTCCCCAGATGGGAGACCCCTCTATCCCCCACAGTTCTACCAAAATGCTTTTAACCCAGCTGCTTTTGCCAGATTTAGTATGTCGCAACCAGGTCCTCAGTACAACAGGTTTAGATTTCCTCCAGGGAATCCCATGGGACAGATGGGTCAGCCGCAGCCACAGTCATCACATTTTCCACCACAGCGCATGCCTAGCAGGATGCCATTCCAATATGGGATGGGTGCTGCAGGTGGAAGTATGGAGCTGCCTCGTAGGGAGAATGACATCAATAGTCCTAGTCAGACTGAACAAGCCAAGCAGCTGTCCCCACAGCAGGCAGTCCCTGTCTCGACTTCAGGTGAGCCCACTCCTCCTTCAATAACGGGTGGCACTGAGAGAGGCCGTCAATCTCAACAGCAGCCGCATGGAGGGCCACCTTACTACAGACCACAGTCCTTCAATCAAGGTTACCTTGGCTATCCTCGAAATGGTCCTATGCCCTATAGAGCTCCAGCAGCTGGACCATACAATCAACCTATGGTACCTGGGAGGGAGCCTTGGCGCTTAGACAGACGCACTCCAGAGGCTCCTCCACAGAGGGTCCCCTCCAGAGAGGGCTCCTTTAGAGAAGAAGTCATGCCAAACAAGCCTCCTGAACTTACAAAGGCACAAGCACCAAATTTTACCGGTAACAACAAACAGGCCGAAAACGAAACCGATAGCGAGGAAGCTTATAGCGAACAAGAGGAACGGAAGGATCTCCAAACCAATGGTAGGGAGGAGCCAAACGTCGAAGGAATGCAGCAGACTAGGAGTCGAGTGCCTCCTACTCTGTCCATCAGTCATATCTTAAGCGGGGCCTCACGAGAGGATCAGCAGCCGACAGAAGGAGCCAAAATGCGAGAGGGGCCCGCTCAGGGTACACCACAGGGTGCCCTGGCCATGCACCCCAGTTCTTCACGCCAAGTTATCCAGTCATCAGAGAACAGGGATCGTGTCGCGCCATCTAACGAGCATCTGAAGAGGGTGCCCGGAAAAGGGCCCTATGATGGAATGGGAGGGCGGCCAAATTTCGATACTTCCTCTGGGCGAGGGTCTTTCGGTGTTTCTCCAAACGAAGGGTTAGATAGATTAGGAGCACAAGGAGATCCTCTTCATCTGGAAATGCACGATCGTGCATTTAGAATGAATTTTAACAATAAAAAAAATTTAGGTAACGCTGCGGAGAGTGTAATAAAGAAAGTTCCTCAGAACAGCGCTCCCGAAGCGGATGTTTACAAGAAAATGCCATTGCTAACCCCGATAAAAGAACCACCCGGCAATGATGTAGAGGACAAACGTTCCCGAGCGAAAACATTGGAAAGTGTATCTGAAAATGGACATTTAGAACCTGGTAAAACGGAGGCTGTTCCTCAGCGGATGCCCCCTGCAAATATGAACAAAGATCCTCCTAAGGGGGCAGAGACTGCGGCGCCTTTCAAGAGTTGGCCTGACTTTCAACCGGGTAGTTTTCTTCAAGAACTTAACGATGTCGGCCCTCCATCTTCAGGGGGCGTAGACAACAAACCTGCGCCCGAAAGAAATCATCGTCTCCCTTTCACTTCAATGCTGAGGGGAATAAACCCATCACAAGCCAGTCCGGAGAATCGCGGTCAGTACTTAGCCTTGGAGGCAGCAAATCGGGAGAGAATACGGGAAAATATGATGGCTGGTAATTTTCTGCACAGCCCAGAGGAGAAACACGAGAGATTTAATCCTACGCGTGTCGCGGACATGAGTTCGTATGCGGCCATGTACGGAAACAAGCGCCCGTCAGACGTTTTACCTCCGCTGCAGTACAGACCTAACTTATCTGCTATGGCGCATCAACGAAACATTGAATCTGCGCAAATGCAACAGGGTGGAAATTCTCAATTTGTGGACCTGAATTCCATGCAATATCGTTACCCGTCCGGACTACCCTCCAGGGAGTCTCTTACGAGAGAGCAGATGTACTTCTTAGAGCAGCAGCAACGTCGACAGCATATGGCATCTTCTATGGATGCCATGATGGCTGGGGGCCAGCCTGAGCGTATGATTGGATTCGGTGGTATGTTACGTCAACAACAACTGTTTAATGCGGCGTACGCAAGTCATATGAGGAACGGCGAGTTTCCAGGATATCCGAATGAAGGTGGGCAAAATCCCCTCCAAGATGGCAAGATTCAGTTGACAGGATAA

Transcript

rna-pdam_00004510

ATGTCAGTCAAAAGTCACGTTTCCTTACTCGCCCCAGACTTCTGTGGGCGTGGTTCTAAGGGAAAAGCCCGGATGTTCCCGGCTTCGTCTTGTGTCGTCATTGTACTCAGTCGGCCATCTGTTTTGGCTGACATGGAAGAGATCCGAAATTGGTGGGAGGTACCATCGATAGCACATTTCTGTTCGTTGTTCCGCGCCGCTTTCGGATTGACTGACTTCGAAATCGAGGATTTAGAAGATGCACTTGTCATTGATGGCTCTAATGAAGAGGGAAACAACCGATTTTTGGCCGATCTTCATGCTCGATTGTTAAGGGGATTGTATGGAATAAAGGATATAACGGCCGAGAATTTCGAGCCATATTTGTCACAAGTATTGAAAATACGCTGGGAAGATGACTTAGGAAAGAAGAACCCTCTGGCGGATAAAGAATACAGCAAACTTTCAACAAGGGAAAAAGTTGAGATTCTACACAACCTTTGTGATTTTAGACTTGATGTCGAAGATGTTCCTGAGTTACTGAAGggCTTAGATGCAGATAGCTTGCGAGTAGAACCACTGGGATTTGACGCTGAGGCCAGAACTTACTGGTACTTCTACGGCACTAGATTATATCGTGAACAAAAGCCTGAACAGTCtgataacaaagtaaacaagaagtctaagaaaaagaaaaagatggagggaaaaaataagaagaagaaagggaaagtgaagaggaagaagaaagcgAAAGGATCATCATCTGACTCAGAGCCAGAATCTGAATCAAGTCCAAGCAGTGATATGCCCAGTAGTGATTATGCTGACGATGAAGATGACGATGAGGAGCAGGAGGTAGATTCAGAAGGGAAGGAAGATGGCGAAAAGAAGCCTCGACCTTCATGGACAGTTGTGTGTTCCACAGAGGAGGAATGGCAACAGCTGGCCGAGTCatttaagaaaagtaaaaacaaagatgagaAGATGCTTTATGAAACACTCAGTGTCGACTTTGTTCCTGAGATTGGCAAAATGATCGAAGCAAAGGATAAAGCCATGAGGAAAAAGCTGCTTATGGAAATGGCACCTCGGCGGGCATCTGACCGAATAGCTTCAAAAGCACAGTCCAGAGAGGAGGAGGAAATACAGGAGGAAAGTGAGAGACAACGGGAACGAGAAAGGGCAGCTGAAGAGAGAAGGAAGGAGGAGGAAGAAAAGCAGCGTGAAAAGCAGCAGCAAGCTGAGAAAAGACAGCAAGATTACTTActgaaaattcttgaaaatggGAAAACAACTCAAGACTTGGAAAAAGTTGgcaaagtgaagaaaaaagtgctTGGTCCAGACTCTGGGTCAGGAGGTCTTGGGTTCAATGTGTTACATTGGGCAAAGCACTgtactctcacagtgcctaTGTctacccaggagtataaatggtGTACAGAGAGAGCCAGAAGAGCGCGTATGCGAGAAGAACGGCAATGGATGATGGCTAATGGTGAATTTGTTCCCGAGGAACTGAAATCAAGCTTGTCTAACGTAGAAGAGAGCAAAGACAGTGAAGAAGGAACCAGTACACGAACTAGTACACGATCAAAACAGTCAGGAGAGGATATCGGACTTGAAGACAGAGATGAAGACTTGTACACTGGAATGTATAAAGTTTTGGATGCTttgaaaaaacacaataatgCATGGCCTTTCCTGGAGCCTGTGGAGGAATCTTATGCCCCTCAATACTACGAGATCATAGAGGAACCAATGGATCTGTCAACCATTGAACAAAAGCTTGATGACAGTAAATACACCACTTTGAATGATTTCAATGCAGACATGAAGTTGATGTTTGAGAACTGTTTAGACTACAATGGCCCTGATAGTATGTACACTAAGATGGCAAACAGCCTTGAGGCAGCTTTCAATCGTCAActgaagaaacattttcctgaAGATGATGACAACAGTGATGAGGACTTTGAAGAAGAGCTTGCAcgcaaaagcaaaaaagacaagagaaagaaaggagaGGCAAGCTCAGGAACTGAGATGTTTGGTAGTTCTCATCCAGGAGAGGACCACCCTTTCCCCCAACAGATGGCCCCATCTGGAATGCAGTCAATGTTTCAAAACCATATGTTACCTAACAGCATGTCAAATGGAGGCATGATGCCATCGCATCACCCTTCCAGAATGCCCTTCCCTGGTCCCCCACATTTTTCCCCAGATGGGAGACCCCTCTATCCCCCACAGTTCTACCAAAATGCTTTTAACCCAGCTGCTTTTGCCAGATTTAGTATGTCGCAACCAGGTCCTCAGTACAACAGGTTTAGATTTCCTCCAGGGAATCCCATGGGACAGATGGGTCAGCCGCAGCCACAGTCATCACATTTTCCACCACAGCGCATGCCTAGCAGGATGCCATTCCAATATGGGATGGGTGCTGCAGGTGGAAGTATGGAGCTGCCTCGTAGGGAGAATGACATCAATAGTCCTAGTCAGACTGAACAAGCCAAGCAGCTGTCCCCACAGCAGGCAGTCCCTGTCTCGACTTCAGGTGAGCCCACTCCTCCTTCAATAACGGGTGGCACTGAGAGAGGCCGTCAATCTCAACAGCAGCCGCATGGAGGGCCACCTTACTACAGACCACAGTCCTTCAATCAAGGTTACCTTGGCTATCCTCGAAATGGTCCTATGCCCTATAGAGCTCCAGCAGCTGGACCATACAATCAACCTATGGTACCTGGGAGGGAGCCTTGGCGCTTAGACAGACGCACTCCAGAGGCTCCTCCACAGAGGGTCCCCTCCAGAGAGGGCTCCTTTAGAGAAGAAGTCATGCCAAACAAGCCTCCTGAACTTACAAAGGCACAAGCACCAAATTTTACCGGTAACAACAAACAGGCCGAAAACGAAACCGATAGCGAGGAAGCTTATAGCGAACAAGAGGAACGGAAGGATCTCCAAACCAATGGTAGGGAGGAGCCAAACGTCGAAGGAATGCAGCAGACTAGGAGTCGAGTGCCTCCTACTCTGTCCATCAGTCATATCTTAAGCGGGGCCTCACGAGAGGATCAGCAGCCGACAGAAGGAGCCAAAATGCGAGAGGGGCCCGCTCAGGGTACACCACAGGGTGCCCTGGCCATGCACCCCAGTTCTTCACGCCAAGTTATCCAGTCATCAGAGAACAGGGATCGTGTCGCGCCATCTAACGAGCATCTGAAGAGGGTGCCCGGAAAAGGGCCCTATGATGGAATGGGAGGGCGGCCAAATTTCGATACTTCCTCTGGGCGAGGGTCTTTCGGTGTTTCTCCAAACGAAGGGTTAGATAGATTAGGAGCACAAGGAGATCCTCTTCATCTGGAAATGCACGATCGTGCATTtagaatgaattttaacaataaaaaaaatttaggtaaCGCTGCGGAGAGTGTAATAAAGAAAGTTCCTCAGAACAGCGCTCCCGAAGCGGatgtttacaagaaaatgcCATTGCTAACCCCGATAAAAGAACCACCCGGCAATGATGTAGAGGACAAACGTTCCCGAGCGAAAACATTGGAAAGTGTATCTGAAAATGGACATTTAGAACCTGGTAAAACGGAGGCTGTTCCTCAGCGGATGCCCCCTGCAAATATGAACAAAGATCCTCCTAAGGGGGCAGAGACTGCGGCGCCTTTCAAGAGTTGGCCTGACTTTCAACCGGGTAGTTTTCTTCAAGAACTTAACGATGTCGGCCCTCCATCTTCAGGGGGCGTAGACAACAAACCTGCGCCCGAAAGAAATCATCGTCTCCCTTTCACTTCAATGCTGAGGGGAATAAACCCATCACAAGCCAGTCCGGAGAATCGCGGTCAGTACTTAGCCTTGGAGGCAGCAAATCGGGAGAGAATACGGGAAAATATGATGGCTGGTAATTTTCTGCACAGCCCAGAGGAGAAACACGAGAGATTTAATCCTACGCGTGTCGCGGACATGAGTTCGTATGCGGCCATGTACGGAAACAAGCGCCCGTCAGACGTTTTACCTCCGCTGCAGTACAGACCTAACTTATCTGCTATGGCGCATCAACGAAACATTGAATCTGCGCAAATGCAACAGGGTGGAAATTCTCAATTTGTGGACCTGAATTCCATGCAATATCGTTACCCGTCCGGACTACCCTCCAGGGAGTCTCTTACGAGAGAGCAGATGTACTTCTTAGAGCAGCAGCAACGTCGACAGCATATGGCATCTTCTATGGATGCCATGATGGCTGGGGGCCAGCCTGAGCGTATGATTGGATTCGGTGGTATGTTACGTCAACAACAACTGTTTAATGCGGCGTACGCAAGTCATATGAGGAACGGCGAGTTTCCAGGATATCCGAATGAAGGTGGGCAAAATCCCCTCCAAGATGGCAAGATTCAGTTGACAGGATAAACATCGTTCGACTcccaacaaaaaatatttttctcatgatATTCACCAATCGTAATAAAGCAACAATACGAAAGAGTAGTTAACACAGTTCAGTAGtccttttaaaagtaatttaccacaaattttgttttatgactAATTCTAGTACAGTCaagtcaaattttccttattcttgGTGTCCAGTTAAATCTTAGTTAGCTTGTGAGGCCAGTCTAGGAAATTTTATTATTGCAAATGTGGCAAGCTATATTAAAAAAGTGTAGCAGTGTAGGTAGAACTTTAAAGTTAGGAAGCTTGGAATTGAgatgataatataaattgcGTTTAGATGTTTCAAGTTGATAACGTATGACATTTTCTTGTCGGATATAGGGTACTTACCAGTACGTGCCTCTGTCGACGCTAATATTTGCATTTCTCAGTGTACCAGTTACTGTTGGCAAGAGATTTATTAAGAATCGTCAGCTTGTTTTGAGCAGTTCTCTTCATGCATAGTTCTACTTCTGATTCTTTTCCATGTATCGTATTTCACTtgttgattgttcaacaaattgaTCGCAGTGTTTTTGTCGCGTGTAACTCTTGAAGGACACCAAATCAAAGTCTATTTCCAgtggcaaattttttaaatctgagATATTTGTAAGAAATGACTACCAGAACTTGAACTTCTTTCGTATTTATTTTGTACCTTTGTATATTTATACTCTTCCatagtaaatttttaactatCCAGGCAAATAAATACTGATTGTAACATAACCCGTATTTCTTTGTCCAAAAGCTTGTCGGTGGCCTTCAAACTTACTTTGCTAATTAAAGAAATCATGCATTTTATTGCGAGTGAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR028942 all species →	Domain	WHIM1 domain	Interproscan
IPR029614 all species →	Family	Chromatin remodeling regulator CECR2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47092 all species →	CAT EYE SYNDROME CRITICAL REGION PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0090537 all species →	Cellular Component	CERF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25830	CECR2; cat eye syndrome critical region protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.