Gene detail

Detailed information of RMX60309.1 in Pocillopora damicornis

Genomic Location: SczhEnG_193:92355...95563
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00018792

ATGGCGGATAGCGATGATGATGATACGCTAGCAAGCTTTGGAACGCCATTTGAGCCCTTAGAGGAAGATGCTCCGCGTAAAAAAGCTGTCCCGGTTCACGACCAAATTGTTACAGATACTGAAGGGAGAAGACGATTTCATGGCGCATTCACGGGTGGTTTTTCAGCCGGGTATTTTAACACGGTTGGAACGAAAGAGGGATGGCAGCCCTCGACTTTCATCTCTTCTCGCTCCAAAAAAGGCGAGCAAAGACAACAGAGGCCAGAGGATTTTATGGATGATGACGACATGGGAGAGTTTGGAATTGCTCCAAAAAGAATCGCGACAAAAGAACAGAAGAAAGTTTTAACTGCAATGGATAGAGCAGAAATGCTGGGCGAAGAACCACTTCCAGCGCCTCAGAAATCTGTGTTTGAGTATCTTTCTGAAGAGGACAAGAAACGAGTGTTGTCTGCTTCGAAGAGTGAAATATCAAAGCCCTCTAGTAAAATACCATCGGAAGGAGGGAGTTCTGCAGTTAATGATTCCTCTCAAAAGAGTGCACCCTCTTCCCGTTGGTCTTGGTCTGGTCACAGCAGTTTTAAACCGTTTGTCAAAGATCCCGCAAAACAGGCGCGCTATGAGGAGTTTCTAAAAAGCAAAAAAGGAGAAGAAGCTTCTCCACAGGTTCATGGCAGCGGTTTAACGGAATGGGAAAGAGAACGTGAAAGGGAGGAATTCGCCCGGTCTGCATCTTTGTATAGACCTCTGAGTTCTACAATGGCGGCCAGATTTACGACTGCGAAACAACAAGATGATCACAGAGTGGTGTACGAAGATGTACCCGCTCAAGAATCTTCAGATTCTTCTGAGCAGGCACAGGCGGCTTCTATGAAAATGTTCGGAAAACTAACTCGGGATAACTTCGAGTGGCATCCCGAAAATGTTTTATGTAAACGGTTCAATATTCCGAACCCCTACCCAGGATCTCACATCGTAGGGGTCCCGAAGGTACGAAAGCCGAAGTTCACACTTGGAGATTTCATAGTACCTCGAGAACCTCGTGCGGTTACTTACGAACATTCGTCAACGAGTGCTAACGACGATGACAAGACGGACAAGTTCGGAAGCTCTACGGAAACGATCAATGCAATCGACCGTCAGTCGAACCCTTCTGATACAAATTCGGTGAGTTCCGGTTTACCTTCGAAAACAGCTGTTGTGCCCGCTTCAGTAACGGCTTTAGCTAATTCGGACATTGCTAGGCCAAGAGAATCAAATGTTAAAGCTGATGAAGAACAAAAGGGAGAGAATTCTGTGCCAAAGCGGCCAGATATGGATTTGTTCAAAGCGATTTTCGCCGATTCGTCTTCGGACGAATCCGAGGCGTCAAGCGATAAGGAAGAAGTCAGCAAAGATGAAGGAACCGAAGATGTATCGATTGCTACTTCGGAAATCAAGTCTCCTGAAGAAGCTTTGCGGAGCCATGTCGATGAAAGAACCGAAGAAAACAGTTTGAGAAATAATGTTCTTCCAAATGATAAAACTCTCGATAAAGAATTGAACATCAAACCGATTGAAAATGAGGAACAGAGACCGGTTGAAACGCAGATTGTGGTCGCGAAAAATACAGAGATAGAGAGAGCGGACTCTTCTCCTGAAAATTTCGGACCGGCCCTACCGCCATCTTTTAGAAAGATAACCCCTTCGAACTCTTTTTCCGGAGAAAAACGTTACGCTGACCGTAAGAAAACTAAGGACGACTCTGACCGGAGGAAACGCCAGGATAAATACGAAGAAACAAAGAAGCGTTATTCTGAGTCTTCCGACAGCGAGGAAGAGTATCGGGCTAAGCATAAACCCAGACATAAATCGAAGAAAAAACACAAACACAAGCACAAAATTAAACGTCGATACGAAGAAAAGGAGAGACTTGAACCGAAAACGAAGGGAAAGGACGAGTTAAGTAAACCTTTAGAACAAGGTCGTGCGTCAGATGACAAACAAATTCTTAACAAGTTGAAGAATCTTCAGAATTTGAAAACGGGAAAAAGAATGCGTGCTTCTGATTTCATGTGA

Transcript

rna-pdam_00018792

atggcggatagcgatgatgatgatacGCTAGCAAGCTTTGGAACGCCATTTGAGCCCTTAGAGGAAGATGCTCCGCGTAAAAAAGCTGTCCCGGTTCACGACCAAATTGTTACAGATACTGAAGGGAGAAGACGATTTCATGGCGCATTCACGGGTGGTTTTTCAGCCGGGTATTTTAACACGGTTGGAACGAAAGAGGGATGGCAGCCCTCGACTTTCATCTCTTCTCGCTCCAAAAAAGGCGAGCAAAGACAACAGAGGCCAGAGGATTTTATGGATGATGACGACATGGGAGAGTTTGGAATTGCTCCAAAAAGAATCGCGACaaaagaacaGAAGAAAGTTTTAACTGCAATGGATAGAGCAGAAATGCTGGGCGAAGAACCACTTCCAGCGCCTCAGAAATCTGTGTTTGAGTATCTTTCTGAAGAGGACAAGAAACGAGTGTTGTCTGCTTCGAAGAGTGAAATATCAAAGCCCTCTAGTAAAATACCATCGGAAGGAGGGAGTTCTGCAGTTAATGATTCCTCTCAAAAGAGTGCACCCTCTTCCCGTTGGTCTTGGTCTGGTCACAGCAGTTTTAAACCGTTTGTCAAAGATCCCGCAAAACAGGCGCGCTATGAGGAGTTtctaaaaagcaaaaaaggagaagaagcTTCTCCACAGGTTCATGGCAGCGGTTTAACGGAATGGGAAAGAGAACGTGAAAGGGAGGAATTCGCCCGGTCTGCATCTTTGTATAGACCTCTGAGTTCTACAATGGCGGCCAGATTTACGACTGCGAAACAACAAGATGATCACAGAGTGGTGTACGAAGATGTACCCGCTCAAGAATCTTCAGATTCTTCTGAGCAGGCACAGGCGGCTTCTATGAAAATGTTCGGAAAACTAACTCGGGATAACTTCGAGTGGCATCCCGAAAATGTTTTATGTAAACGGTTCAATATTCCGAACCCCTACCCAGGATCTCACATCGTAGGGGTCCCGAAGGTACGAAAGCCGAAGTTCACACTTGGAGATTTCATAGTACCTCGAGAACCTCGTGCGGTTACTTACGAACATTCGTCAACGAGTGCTAACGACGATGACAAGACGGACAAGTTCGGAAGCTCTACGGAAACGATCAATGCAATCGACCGTCAGTCGAACCCTTCTGATACAAATTCGGTGAGTTCCGGTTTACCTTCGAAAACAGCTGTTGTGCCCGCTTCAGTAACGGCTTTAGCTAATTCGGACATTGCTAGGCCAAGAGAATCAAATGTTAAAGCTGATGAAGAACAAAAGGGAGAGAATTCTGTGCCAAAGCGGCCAGATATGGATTTGTTCAAAGCGATTTTCGCCGATTCGTCTTCGGACGAATCCGAGGCGTCAAGCGATAAGGAAGAAGTCAGCAAAGATGAAGGAACCGAAGATGTATCGATTGCTACTTCGGAAATCAAGTCTCCTGAAGAAGCTTTGCGGAGCCATGTCGATGAAAGAACCGAAGAAAACAGTTTGAGAAATAATGTTCTTCCAAATGATAAAACTCTCGATAAAGAATTGAACATCAAACCGATTGAAAATGAGGAACAGAGACCGGTTGAAACGCAGATTGTGGTCGCGAAAAATACAGAGATAGAGAGAGCGGACTCTTCTCCTGAAAATTTCGGACCGGCCCTACCGCCATCTTTTAGAAAGATAACCCCTTCGAACTCTTTTTCCGGAGAAAAACGTTACGCTGACCGTAAGAAAACTAAGGACGACTCTGACCGGAGGAAACGCCAGGATAAATacgaagaaacaaagaagCGTTATTCTGAGTCTTCCGACAGCGAGGAAGAGTATCGGGCTAAGCATAAACCCAGACATAAATcgaagaaaaaacacaaacacaagcACAAAATTAAACGTCGATACGAAGAAAAGGAGAGACTTGAACCGAAAACGAAGGGAAAGGACGAGTTAAGTAAACCTTTAGAACAAGGTCGTGCGTCAGATgacaaacaaattcttaacAAGTTGAAGAATCTTCAGAATTTGAAAACGGGAAAAAGAATGCGTGCTTCTGATTTCATGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07713 all species →	DUF1604	Protein of unknown function (DUF1604)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011666 all species →	Domain	G patch domain-containing protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13384 all species →	G PATCH DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13123	GPATCH1; G patch domain-containing protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.