Gene detail

Detailed information of RMX60628.1 in Pocillopora damicornis

Genomic Location: SczhEnG_141:103813...121829
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00013754

GGTCACGCGAAACCATTGAAACTGCGATGTTCACAGCGGACACCACATTTGCTGGCGTGCGTAGCTCCGCCTAACGTTTTTCGCGGGTCGAAATCTGGCTTCGACAAGCCCGTTCAGGAAAGATACAGGTATCACAATTATGCCCCTTCTCCAAGGTTTCTTGGAAAAGAGTGGAAAGGGCAAAATCATGAGGCACGTTTACCTGGAGGACACCGGGGAAGGCATCAGCGTGGCCGAAGAGGAGCAGGAAACATGGCAAAACCAATGAATAGAGAGGACTTGTACCAATCTTATCCATCTCATGCACTTCTAAGAGGACGTGTAAATTCACAACAACAGAAAAATTCTCCACCTTCATGGCACCCAGGTAGATCAATGAATTATGGCCCACCTGACTCACCAGCCACTTTTTACCATCAAAGGAGCACCAGGGTGCATTCTAGAGGAGGTGGATACAGCCATCCACCTAAGGTGCACCCCAAGAGTTTCAGACCAGCCTGTGCAAGCTCCAAAGGTACATCTGTTTCAAATGAAAATGAATTGTCATCAACTACAGAAAGTCAACAAGTGGACAAAAATGTAACAGTCAGTGTTAAAAGTTCTTCAAGCCTGGCTAAACTGACGAACAACAGAGCACAAGCACAAAAGGATGGACAAACCACATCAACAAGTACCAGTGATAATCCACCATTGGAGAAGAAATCTGAAAACAAGAATCCATCGATCAACAAAGTTGCACCATTTATTCACAAACCATCACCTAACTCTTCTAAATTCATTGATGGCACAAATTCATCCTCATTGACTCTTAATAACCCTACCTCTGAAACAGCCTCAGAAGTAAAACATGAAGATCAAGTAAAACTGCATTGTGGCACAGAAGTGCCTCCTATGAATGTGACAGTTTCCAGTGTGTCTCAGATTATGACCAGTACTCCACCATGTCTTGCTTCTCAGGATGGCATGATGACCGTCTTTGCACCAACTTCTGATGGTCAAATGAAACCAATCATTAGGACAATTTGTAGCTGTCAATTAAAGAAGAGATCTTTGAAATATGCAGACAAAGGAAAAACAAAAAATGACTCCATTATCATAGACTCTGATGAAGAAGGGGATAACAAAAGCAAAGCAGCAAGTGGCTCTGTTAATGAGCAAGATGTAAGAGTACCACCAGAAAGCTGCCCCCTTATGAAGGACGCATCAAGTGAAATGGATCAACTGAGTTGTCAAGATACACCAAAAAAACCTGCAAGAGTACCTCCAGAAAGCTGCCCCCATATGAAGGACTCAACAAGTGAAGTGGATCAACCAAGTTGTCAAGATTCAACAAGAAAACGAGCAAAAATGAGTACAGATAGTGCTTCGGGAGATAGCTGTCCAGCAAAAGAGTCCATAACAGAAACAGTATCCAGGGTAATTGACAGTTTAGGGCATAGTCTGGGTGATGTCTGTAGCAGCAGTACCTCATCAGACTCACTATCTCTAGTTACTGCAAACTTAACAGATAACGGTCAGCTTCTAGGTGATCCGCAGATCTTACGGGGAATATTGAGTGTATGTAAAGAAACGGCAAGACCACTGAAGAAGTTCAAGTCGTCTCCAAGAAATTTGTACACCGCAGCGAAAGACTGCAATATCCAAAAAGTTATTGCTCTCTTGGTCGCGGGGTGTGATCCTAACCAACAACTGATGAAAGCCAAAGGAAAGACAGCGTTGCATGCAGCTGCTGCGGGAGGTTACGTCGACATAATTGCTTGCCTGAGACTGGCGGGATGCGACTTAAATCTTGTAGACTATGAAAATAGAACCCCAATTTTTGATGCTGTTAGTAACCACAAAGTGAAAGCCATCGAATACCTTATTGATTGCGGTGCAGTCTTGGGAACCAAGGATACTAAAGGTATGACATGTCTTCATTTGGCTGCCCGACAGGGGCACCCGGACCTGATAAAATTACTACTCAATACAGGAAAATTTGATATGAACGAAAAGGATGACGGAGGATGGACTCCTATTATGTGGGCAGCTGAAGACAAACATCGTGATGCTACTCAGCTTTTGATTGAACAGGGCGCTAATGTCCACATTAGAGATGAAGAGCTTAACACTCCCCTTCATTGGGCAGCGTTGTCCGGAAATCTCGAAGTGTGCAGACTTCTTTTAGAGGCTCATGCCGATATAAACAGTTTGAATATATTCAAGGAGACATCTCTACATATTGCTGCGAGAGAAGATTGCTACAACTGTGTGCATCAGTCGGGGAGCAAACATTTACATCAAGAACAAAGACGGCCAGACACCTCTCACGTGATATTTCCCGTGGGAAAGAAAATGTTTGAATATCTTGTATTAAGAAGGTTGACGACGTACCATTTCCGGACTTCACATTTGTCAAAGAATCCTTTGAAATTTACAACGGGAACAATAAACTGGAGTATTTCAAAATTTGAGGGATGTGCCTGTGACGGTGACTGTCGC

Transcript

rna-pdam_00013754

GGTCACGCGAAACCATTGAAACTGCGATGTTCACAGCGGACACCACATTTGCTGGCGTGCGTAGCTCCGCCTAACGTTTTTCGCGGGTCGAAATCTGGCTTCGACAAGCCCGTTCAGGAAAGATACAGGTATCACAATTATGCCCCTTCTCCAAGGTTTCTTGGAAAAGAGTGGAAAGGGCAAAATCATGAGGCACGTTTACCTGGAGGACACCGGGGAAGGCATCAGCGTGGCCGAAGAGGAGCAGGAAACATGGCAAAACCAATGAATAGAGAGGACTTGTACCAATCTTATCCATCTCATGCACTTCTAAGAGGACGTGTAAATtcacaacaacagaaaaattctcCACCTTCATGGCACCCAGGTAGATCAATGAATTATGGCCCACCTGACTCACCAGCCACTTTTTACCATCAAAGGAGCACCAGGGTGCATTCTAGAGGAGGTGGATACAGCCATCCACCTAAGGTGCACCCCAAGAGTTTCAGACCAGCCTGTGCAAGCTCCAAAGGTACATctgtttcaaatgaaaatgaattgtcATCAACTACAGAAAGTCAACAAGTGGACAAAAATGTAACAGTCAGTGTTAAAAGTTCTTCAAGCCTGGCTAAACTGACGAACAACAGAGCACAAGCACAAAAGGATGGACAAACCACATCAACAAGTACCAGTGATAATCCACCATTGGAgaagaaatctgaaaacaaGAATCCATCGATCAACAAAGTTGCACCATTTATTCACAAACCATCACCTAACTCTTCTAAATTCATTGATGGCACAAATTCATCCTCATTGACTCTTAATAACCCTACCTCTGAAACAGCCTCAGAAGTAAAACATGAAGATCAAGTAAAACTGCATTGTGGCACAGAAGTGCCTCCTATGAATGTGACAGTTTCCAGTGTGTCTCAGATTATGACCAGTACTCCACCATGTCTTGCTTCTCAGGATGGCATGATGACCGTCTTTGCACCAACTTCTGATGGTCAAATGAAACCAATCATTAGGACAATTTGTAGCTGTCAATTAAAGAAGAGATCTTTGAAATATgcagacaaaggaaaaacaaaaaatgactCCATTATCATAGACTCTGATGAAGAAGGGGataacaaaagcaaagcaGCAAGTGGCTCTGTTAATGAGCAAGATGTAAGAGTACCACCAGAAAGCTGCCCCCTTATGAAGGACGCATCAAGTGAAATGGATCAACTGAGTTGTCAAGATACACCAAAAAAACCTGCAAGAGTACCTCCAGAAAGCTGCCCCCATATGAAGGACTCAACAAGTGAAGTGGATCAACCAagttgtCAAGATTCAACAAGAAAACGAGCAAAAATGAGTACAGATAGTGCTTCGGGAGATAGCTGTCCAGCAAAAGAGTCCATAACAGAAACAGTATCCAGGGTAATTGACAGTTTAGGGCATAGTCTGGGTGATGTCTGTAGCAGCAGTACCTCATCAGACTCACTATCTCTAGTTACTGCAAACTTAACAGATAACGGTCAGCTTCTAGGTGATCCGCAGATCTTACGGGGAATATTGAGTGTATGTAAAGAAACGGCAAGACCACTGAAGAAGTTCAAGTCGTCTCCAAGAAATTTGTACACCGCAGCGAAAGACTGCAATATCCAAAAAGTTATTGCTCTCTTGGTCGCGGGGTGTGATCCTAACCAACAACTGATGAAAGCCAAAGGAAAGACAGCGTTGCATGCAGCTGCTGCGGGAGGTTACGTCGACATAATTGCTTGCCTGAGACTGGCGGGATGCGACTTAAATCTTGTAGACTATGAAAATAGAACCCCAATTTTTGATGCTGTTAGTAACCACAAAGTGAAAGCCATCGAATACCTTATTGATTGCGGTGCAGTCTTGGGAACCAAGgaTACTAAAGGTATGACATGTCTTCATTTGGCTGCCCGACAGGGGCACCCGGACCTGATAAAATTACTACTCAATACAGGAAAATTTGATATGAACGAAAAGGATGACGGAGGATGGACTCCTATTATGTGGGCAGCTGAAGACAAACATCGTGATGCTACTCAGCTTTTGATTGAACAGGGCGCTAATGTCCACATTAGAGATGAAGAGCTTAACACTCCCCTTCATTGGGCAGCGTTGTCCGGAAATCTCGAAGTGTGCAGACTTCTTTTAGAGGCTCATGCCGATATAAACAGTTTGAATATATTCAAGGAGACATCTCTACATATTGCTGCGAGAGAAGATTGCTACAACTGTGTGCATCAGTCGGGGAGCAAACATTTACATCAAGAACAAAGACGGCCAGACACCTCTCACGTGATATTTCCCGtgggaaagaaaatgtttgaatatcTTGTATTAAGAAGGTTGACGACGTACCATTTCCGGACTTCACATTTGTCAAAGAatcctttgaaatttacaaCGGGAACAATAAACTGgagtatttcaaaatttgagGGATGTGCCTGTGACGGTGACTGTCGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043550 all species →	Family	Histone-lysine N-methyltransferase EHMT1/EHMT2	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46307 all species →	G9A, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0002039 all species →	Molecular Function	p53 binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006306 all species →	Biological Process	obsolete DNA methylation	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018027 all species →	Biological Process	peptidyl-lysine dimethylation	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0046974 all species →	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051570 all species →	Biological Process	obsolete regulation of histone H3-K9 methylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX60628.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.