Genomic Location: SczhEnG_99:416042...428277
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families
| CDS |
| pdam_00003474 |
| Transcript |
| rna-pdam_00003474 |
| Protein |
| RMX60869.1 |
| Family type | Membership / link |
|---|---|
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00097 all species → | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051657 all species → | Family | RNF168/RNF169 E3 ubiquitin-protein ligase | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR018957 all species → | Domain | Zinc finger, C3HC4 RING-type | Interproscan |
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23328 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006302 all species → | Biological Process | double-strand break repair | Interproscan |
| GO:0031491 all species → | Molecular Function | nucleosome binding | Interproscan |
| GO:0035861 all species → | Cellular Component | site of double-strand break | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20779 | RNF168; E3 ubiquitin-protein ligase RNF168 | EC:2.3.2.31 | DNA repair and recombination proteins | ko03400 | deepkoala |
