Gene detail

Detailed information of RMX60872.1 in Pocillopora damicornis

Genomic Location: SczhEnG_99:439821...450755
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00003477

GTCCACGCTTGTCAACGGGAACAAGCGTAGTAATTAGCGCGAACTCCGATCACAGGCTCAGCGGGTGAATTTATGTTTTACTGCTTTCCCACTGTTACGATTTAGTCAAACATTTATTGTTGCAGCTTTTAGGTCAACTTGACGGAAAGCGTGGACGAACGTACTGCAAGCGACTCACGAATTACGTGGTGCGGTGAAACCTTTGAAGTGACAAGATTTTGTGTTTAGAGCACAGTTGATTGCGTTCGGAGTTTTATCAACAATGGTCTCTTTCTACGTCTTTCTTGTTGTGCTTGCCACCGTTTCTTCTGGTTTTGGTCAAGATAACGATAACGAACCGTCCTGTGCTACAGTGAAGACTGCCTACAGACAGAAAAGGCTGACAGATAGTGATGTACCGCAATGGGCTGTGAAAGGGGATGACCTTCGCGTCTGCCCGAAAGACAACGGTAAGCAATGCTGCTCACAGCAAATGGAAGATCGCTTCGCTGTCTTTGCGAGCGAAGATTTTGACAAAGCGGTCTCGTCGAAAGTTAGCGAAATGAGGAGACAGTTCCACCTTCAAGAAAAAGCATTTAACGCACACTTCCAATCCTTGATCAAGGAATCCCATGAATCACTGGATGCTTACTTCAAGAAAGTCTATGTTCACTACTACTCCCAGAACAGCAAGATATTCTCAGATTTTTATGCAGAATTGATGAAATATTATGAGGGAGAGTCCAGCTCTGACATGAAAACAATCttaaacaaactgttcaaaattCTCATGCAAAAAATGTTCCAGATCATGCATGCTCAGTCCCAGTTCAGCAATTCTTATCTGGAATGTATACCGAAGCATATGGATCAGCTAAAACCTTTTGGGAATTATCCAGAAACGTTAACCTCTGAGTTGAgaagtgttttaatttttgcaaaggCCCTTACAAAAGCACTTGATGATGTTCATGATGTTTTCATCATGCTTGAGAACTCAATTTCTTCTAAAGACTGTCAGGATCAACTCATCAAGCTGAAATACTGCTCCTGGTGCAAAGCTTTGACATCATTAAAACCTTGTCATCAGTTTTGTATGGATGTACATAAGGGTTGTTTGGCTGACATAGCAAAGGTGAACAATCAATGGCAACGCTACCTGGCGGCAGTGAACGAACTTTTTCAGAAGCTTTCAGGGGTATACAATATTGAAATTATCCTGTCCAAAGCGCACATCAAGATGTCATTTGCCATCATGAATTTCCAAGAACCAACTGTGGCTAAAGCTGTCGAGGAAAggGTATTCCAAGTATGTGGTAACCCTGAATTAACTAAGAGATCAACAGATGACTTTTTCCTTGAAGGAAACAATcgacaaagaagagaaaatgatgcTGCTTTACCCAAAAAATCAGCAGATGTCACCTTGGAATCATTAAAAACAGACTTCAAAGCCGTAATGAAAATGGCTGATAACTTTTGGACTTCACTACCAGACATGTTATGTAGTGACATAGCAGCTGAAAAGAATAACCCCTCAGAGTGTTGGAATGGTGCTGGTAAAGGAAGttactCAAGCCCTGATGATGGAGAGAATGCCATCGAAGAAAACCAAGCACCATCTGTGTTAAAAGCTagtgaaaaattgaaaaacattgtGAAAATGATTGAGGAATATTCCAATGCTGCAGTGTATGgggatgaaataaatatcGTCACCACAGACaatgaggatgatgatgaatcAGGAAGTGGGAGTGGTGATGGAAGTGGAGGTAGTGGAGGCAGTGGAACAAATGAAATACCAATTGGCACAGATGCACCACCTACAGACCCCATCAATGGGGTTGATGGCCttgacaatgatgataatgttgttgggggaggggtgggtggaAACACTCAAGGACAATCAAGGAACTCTGCTTCACAAACTGTAGTTGGAGCATGGTTGTTCTATTCAGcaattttattgttgtgttCTTCACTTGTACCATAATGGTATTAATGGAAGTGGGATTCCTGTCATTTACTACAACACAAAACATTTGCATCATACTGTACAGTACGGAATGGATTGTCTGCACtcagtttctttgaaaagattaTTTAGTTTTGATACTGGTCATCAAGGCATTGTCCATGTTATTCagtgcaaaaatttcaatccaGCTATCATCTCAAACTGTGCAAGAAACAAGCTAGactatgaatgaaaaatatcaagctttttatttgtgaatatgggaatttatttttacaaaacatgACTGGAATGAAtgttaattaattgatttgtaaagttttaagtttgcacaactatttgaaaaatcagtagttgttttttcacttcaaattCCTGCTCAAAATGAACTTCAGTTTGCTACAGTTATCATAAGCTCTTACAAATAGTCTATGGTATTAAGACTTGACAGAAATTGTATATACAATTGACCCCTCTTTTGTGGCACTTTGGTGCCCAATGTTGATTGGAGTTAGATGGAAAGGCTTCAAGTGTCATCTCGTATAGTATTTGTTTGGATTTTGTAAAAGAGGGAGCTTTgtgctcaaatttttttaaaactgctttATTGGACATAGTGTGCCATTTGCTTATACTTTTAGAGCTTTATTAGACACTGGCTGAACTTGAAATGTCATTAAGCTTGTCAAGAGAGGAAGTGCTCCAAATTTAATTATCAACAACCAGAATATAGAAAAGAAGTAGTTTGTAAATCTATGTCACAGGCACTTAGAGATAAGTGCAAGTAACTTTAAGACTGGTAATGCATTGGGTAAAGTGGTTGGTTGTGAAAAATGTGAAAGCCTCACATTTTCTTCACTCCTTCCTTGAATGAACAAGTTATCTTGTCAATAGtaggctttttaaaaataacacaagtgcaatttgtgaatGAGTTTTAAAAGTAATCATGGATTGCTTTAATTGTAATTGGCATAGCGTTTGGTTAGATCCAGAAAATTGATTGAGTGGTTTCAACAAATAGAACGCAAAACTAACCTAATCATGATTTTTCATTAGTATTCTCCCACAGTTGAAATTgagagtttctttttcatttgagctCTCACAAGCTTTTGTATACTTCCCTATTATTCTTATGGGCTGTTgtgattgtgtttttttgtggttttgtaATACTCAATTCAAAGGCGCTCTTAGTGAGAGGGATGTAATCCTTCAGTGGttcaaacttgtttgaatAGAATCAGTGACTAATTTCCACCTTTTGAGTTCATTACTATTATTCATGTTtgtcttaactctttaacccccatgaatgaccaagacagaatctCTCCTTACATCCAAATTGTATTGcagagagtaaggagaattagtgAGGAGATCTAGGAAGTGAAAGACTTAGAAGCTAAGGTGAATACCACTATGTACTGAACTGCTCAGAAGCAGGAGTTAAATTGTTATGACCACTGTTTAAACTGTACTTTTatagagaaaggaaaaaatttatattttgatcacTTTGTAACTTGTATGAATTAATACTGGTAccatttgtgttttttaacaaTGGGCATTTAATAGACTACTAAAAGAGAAGTCTTGGTATGTGATTAAGAGCTCCTCATGggcttggttttttttttttttaatgatatttgaTATGATCTTCTGTAGAAATTCTTCCTGGTCTTGGATTTGTCacaatttttaacttgtaaaGAAATCATCTGATGACTTATTGAAATTGAAgggaaattttctgtttgaagtATGTTCATTATTGTGGTtagataaatttatattttcaaaagtggATTCACACACCAAAGttgcttttccttctttcagtGTTCCACtagtatgtttttttttctatcaatgttcagtacaaaataattatccTGTGACACAGTTGTTAACTTGGTGTTTCATTATCAATTTCTTGTAAGGGAAATTACTGTATGCAGAGACAATATAACTAGTAATATACAAcagatttcaaataaaaatgacttcCAATTTTGGAGTCAACATATCACTTGCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01153 all species →	Glypican	Glypican	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001863 all species →	Family	Glypican	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10822 all species →	GLYPICAN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:1905475 all species →	Biological Process	regulation of protein localization to membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08110	GPC4; glypican 4	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.