Gene detail

Detailed information of RMX60875.1 in Pocillopora damicornis

Genomic Location: SczhEnG_99:404839...415924
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00003472

ATGCATTTCGGACGAAGTGCCAACATGGCGGCTCAAGCTCAAGCTGGGTATTCGTCGTATTCCAATGAGATAAAGGAGAAGCTAAGTCTATGGGATGTGAAGGATTCTCCTCTCGCACCATTGTCAGAAAAGCAAAGAAATAGTGTACTTGAACTTACTACAGTAGCAGGAAATCGTCCTCTTTTAGACGAGTTACCTGATGACGACTGCACTAGTTTACCTGCAAAGAGGACCTTGAGTGAAACCAGTAAAGAAGCTGCTGTGGACATGGCAACAGTTGATTTGGGATCAGAAAAAATAGAAAATGCTCAGCAGTTTTTTGCTTGGTTTGCAAATGTTGAAGCACAAATGGAGGAGGAGCAGGAATCATCTTACAGATCCTATGCAGCACAGTTGCGTTCTTATCGTGATCATTGTGACAGTATTCTGAGTGAAGTGGAGTCAGCTTTGAATCATCTGCAGGATCTACAGCAGAAGCACTTATTGGTATCCACAAAAACTGGGGCTCTTCATGAAGCTTGTGAACAACTTCTTCAAGATCAGACAAAGTTGATGAACATGGCCGAAAGCATCAGCAACAAGTTGTCCTACTTCAATGCTTTAGATCATCTTAGACATAAACTCAACTCATCCACGCTCTCTGTGACAAGCGAGTCCTTTGTTCCGATGTTGGCAAGACTTGATGAGTGTATTTCATTTATATCAAGCAATCCTCAGTTCAAAGAATCCCAAGTGTATCTTGTCAGATTCAAACAGTGCTTGAACCAGGCCCTCAATCAAGTGAAAATGCATGTTGTGAATTTGCTGAAAAATGCCACAGCACAGGTGTTGGCAAATAAGGAAGGTGGAAATTCTTCTGAAAGTTCCTTTGCTTTATTTTATGGGAAATTCAGGACTTGTGCTCCAAGAGTGAAGAGTTTAATGGAACAGATTGAACAGAGGAGTCACTTAAGTTCTGAGTACAGTTCACTTTTAGGTGACTGCCAGCAGTGTTATCTCTCTCAGCGTTCTCAACTCCTGACTCCATGTGTTAGTGATGCTATTGATAAACTGGCCAAGCAGTATGAAAGAAATCCTTGTTCTCTGGTTCGTGCTGGTTGTTCAGTGTTGATTCGCGTCTGTCAGGATGAATACCAGTTATACTATCACTTCTTCTCTAGGCCAAGTTCAGGTCTCGACTCCTTGTTAGAAATTTTGTGCAGTACTTTATATGATTCGCTGAGACCTGTAATAATCCACATGAATCACATGGAGACACTCACTGAACTCTGCACAATATTAAAGGTGGAAATGATTGAGGATCATGTGCAGCAAAAAGGTGAAGAACTAGCCGCTTTTGAAGTTGTTGTTCTACAGATGTTAGAGGATGTACAAGAACGGCTGGTTTACCGGGCACAGGCGTACATTGAGAGTGACATCCAGAAATATTCCCCAGCACCTGGTGATCTAGCTTATCCAGAAAAACTTATTATTGGGGTTGGTAAACACTACTGTAAGATTGAAACTGCAGGGGATAATGACAAAGAGGAAAAACAATCTGGAGAAGAAGAGAAGAAGTCTGTTGAGTTACCAGGAGCGTTAGCGGACCTTCAGGGTATGTGGTACCCAACAGTCAGACGCACACTGGTGTGTCTCTCAAAACTCTATCGGTGCATCTCGAAAGAAACATTTGAAGGCCTTTCTCAGGAGGCTTTGTCCCTCTGCATCCAGTCCCTTAAAACAGCAAGCTCTCTTATTGCTCAGAGAAAGGATTCTATAAACGGTCATCTGTTCCTCATAAAACATCTGCTGATCCTCAGAGAGCAGATTGCCCCTTTTGATGTTGATTTTGCTGTCAAGGAAATGTCGCTGGACTTCAGTAAAATGCGGACTGCAGCATATGGTTTGTGGAGTCACAGCAACAGGCTGTTTGCTCTCAGTGGCAACAATGCATTGCTGGAATTTTTGTTAGATGGAGCGCCTCAGTTAACAGAAAACTATCTGGATTCAAAGAAGGATGTTGATGTTGAACTCAGGATTGTGTGTGAGCAGTTTATTCAAAATGTATCAGAGTCTCTCATCTCTCCTTTGTCAGCGTTCTTGACCAAGGTAACAGTGATTAAGAATCTTGCCCAAGAGGAAGGAAAAGATACTAAAGCATTCCTCAAGCAACAACCTTTTGCAAAACCAGAGAATGTTCGCAAAGTTGTTAGTGAGACTTACATGTTGCTGAAGTCCAAGCTCACAAGCACTCTACAAAGCATGGCTTTGTTTTTGGCAAACAAAGACACAGAGTACATTCTCTTTAAACCTGTCAAGGCTAAGGTTCAAGAATATTACAAACAAATGAATGACTTGGTGATGGAAACCTACTCTGAAGAAGATCAACAGATCATTGGATGTCCATCAATTCAGCAGGTTTGTTAA

Transcript

rna-pdam_00003472

ATGCATTTCGGACGAAGTGCCAACATGGCGGCTCAAGCTCAAGCTGGGTATTCGTCGTATTCCAATGAGATAAAGGAGAAGCTAAGTCTATGGGATGTGAAGGATTCTCCTCTCGCACCATTGTcagaaaagcaaagaaatagTGTACTTGAACTTACTACAGTAGCAGGAAATCGTCCTCTTTTAGACGAGTTACCTGATGACGACTGCACTAGTTTACCTGCAAAGAGGACCTTGAGTGAAACCAGTAAAGAAGCTGCTGTGGACATGGCAACAGTTGATTTGGGatcagaaaaaatagaaaatgctCAGCAGTTTTTTGCTTGGTTTGCAAATGTTGAAGCACAAATGGAGGAGGAGCAGGAATCATCTTACAGATCCTATGCAGCACAGTTGCGTTCTTATCGTGATCATTGTGACAGTATTCTGAGTGAAGTGGAGTCAGCTTTGAATCATCTGCAGGATCTACAGCAGAAGCACTTATTGGTATCCACAAAAACTGGGGCTCTTCATGAAGCTTGTGAACAACTTCTTCAAGATCAGACAAAGTTGATGAACATGGCCGAAAGCATCAGCAACAAGTTGTCCTACTTCAATGCTTTAGATCATCTTAGACATaaaCTCAACTCATCCACGCTCTCTGTGACAAGCGAGTCCTTTGTTCCGATGTTGGCAAGACTTGATGAGTGTATTTCATTTATATCAAGCAATCCTCAGTTCAAAGAATCCCAAGTGTATCTTGTCAGATTCAAACAGTGCTTGAACCAGGCCCTCAATCAAGTGAAAATGCATGTTGtgaatttgctgaaaaatgcCACAGCACAGGTGTTGGCAAATAAGGAAGGTGGAAATTCTTCTGAAAGTTcctttgctttattttatgGGAAATTCAGGACTTGTGCTCCAAGAGTGAAGaGTTTAATGGAACAGATTGAACAGAGGAGTCACTTAAGTTCTGAGTACAGTTCACTTTTAGGTGACTGCCAGCAGTGTTATCTCTCTCAGCGTTCTCAACTCCTGACTCCATGTGTTAGTGATGCTATTGATAAACTGGCCAAGCAGTATGAAAGAAATCCTTGTTCTCTGGTTCGTGCTGGTTGTTCAGTGTTGATTCGCGTCTGTCAGGATGAATACCAGTTATACTATCACTTCTTCTCTAGGCCAAGTTCAGGTCTCGACTCCTTGTTAGAAATTTTGTGCAGTACTTTATATGATTCGCTGAGACCTGTAATAATCCACATGAATCACATGGAGACACTCACTGAACTCTGCACAAtattaaagGTGGAAATGATTGAGGATCATGTGCAGCAAAAAGgtgAAGAACTAGCCGCTTTTGAAGTTGTTGTTCTACAGATGTTAGAGGATGTACAAGAACGGCTGGTTTACCGGGCACAGGCGTACATTGAGAGTGACATCCAGAAATATTCCCCAGCACCTGGTGATCTAGCTTATCCAGAAAAACTTATTATTGGGGTTGGTAAACACTACTGTAAGATTGAAACTGCAGGGGATAAtgacaaagaggaaaaacaatctggagaagaagagaagaagtCTGTTGaGTTACCAGGAGCGTTAGCGGACCTTCAGGGTATGTGGTACCCAACAGTCAGACGCACACTGGTGTGTCTCTCAAAACTCTATCGGTGCATCTCGaaagaaacatttgaaggCCTTTCTCAGGAGGCTTTGTCCCTCTGCATCCAGTCCCTTAAAACAGCAAGCTCTCTTATTGCTCAGAGAAAGGATTCTATAAACGGTCATCTGTTCCTCATAAAACATCTGCTGATCCTCAGAGAGCAGATTGCCCcttttgatgttgattttGCTGTCAAGGAAATGTCGCTGGACTTCAGTAAAATGCGGACTGCAGCATATGGTTTGTGGAGTCACAGCAACAGGCTGTTTGCTCTCAGTGGCAACAATGCATTGCTGGAATTTTTGTTAGATGGAGCGCCTCAGTTAACAGAAAACTATCTGGATTCAAAGAAGGATGTTGATGTTGAACTCAGGATTGTGTGTGAGCAGTTTATTCAAAATGTATCAGAGTCTCTCATCTCTCCTTTGTCAGCGTTCTTGACCAAGgTAACAGTGATTAAGAATCTTGCCcaagaggaaggaaaagataCTAAAGCATTCCTCAAGCAACAACCTTTTGCAAAACCagagaatGTTCGCAAAGTTGTTAGTGAGACTTACATGTTGCTGAAGTCCAAGCTCACAAGCACTCTACAAAGCATGGCTTTGTTTTTGGCAAACAAAGACACAGAGTACATTCTCTTTAAACCTGTCAAGGCTAAGGTTCAAGAATAttacaaacaaatgaatgacTTGGTGATGGAAACCTACTCTGAAGAAGATCAACAGATCATTGGATGTCCATCAATTCAGCAGGTTTGTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04136 all species →	COG3_N	Conserved oligomeric Golgi complex subunit 3, N-terminal	Repeat	Interproscan
PF20671 all species →	COG3_C	Conserved oligomeric Golgi complex subunit 3, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007265 all species →	Family	Conserved oligomeric Golgi complex, subunit 3	Interproscan
IPR048320 all species →	Domain	Conserved oligomeric Golgi complex subunit 3, N-terminal	Interproscan
IPR048685 all species →	Domain	Conserved oligomeric Golgi complex subunit 3, C-terminal	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13302 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005801 all species →	Cellular Component	cis-Golgi network	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20290	COG3, SEC34; conserved oligomeric Golgi complex subunit 3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.