Gene detail

Detailed information of RMX60876.1 in Pocillopora damicornis

Genomic Location: SczhEnG_99:415981...428478
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00003473

ATGGCGGCCGAATTGTCCATTTTAGCAAGTTCGTTTCTGGAGACGAAACCCGAGAGTTATACAGCCTTTTTTCTTGAATGCATAGAATCAAAACAGCACCTTAATTTAGAGAAAATTCCGGATGGCTGGATAGGAAAAGTCAATAGTGTTTGTCTACTTGGAATAACAGTTGAACAATGTGATACAGAAGCCTTCAGGACAAATTGTTCATCATGGCTAAGAGGTCTTCTCCAGATAATTCAGACATCAAAAAAATCAAGTGTCCTTCAGTATTGCAGCAAGATCCTTGATAACATTTTAAAACATGCAGCAGAGTTTTCAGAATTATCAAGAGAGTTGTCTAACTCAGTCCTTCCATCCATCATTTCAACCTTGTTGGCCAACAAATGTTCAGACGAGAGCTCAGTGTTGTTGATGCTATCTTCATGTATTCGCTATTTCCCAGGACCTTCAGGACCCTCCAGGAATCAAATTGAGAAATTTATTTTACCACCTTTAAATTCATTCTGCAATGAAACAATGAAGGCTGCATGCAATTGCTACGCCTTGTTACCAAGATGTAGTCGCAGTGGGTCAGGTGACAAGCAACAGCTGTGTCCTTGGAATATACAATGGAACAAAGTGCTTTGTACAATTCATAAACTCCTTGATAGCGCCTACGAAAATGTTGAGCCAGTTGCCAACAAACCCTCCCAAGACTCAGAAAATGAATCCCTTCCACTTGGTGATGTTCCAGCCACAGAACCAGACCGAACACACACTCTCGTCATAAGGTTGAATTCATTGCTTCACCTCCTCTCAGGAATGATAAGGGAAGAACATCTAAAAGTTGTGGCAGTTCCTATTGATTCTACAATGAACCTTTTAGCTAGAATAATGAATGTGACCTGCAACTCACTGAAAAGTGCTGTTGTTGTGGAATCAGTGTTGTTGAGAGCAAGTTTACCATTAATTCATACAAATGCTGTAGATTTGTTAACCACACTTATCACAAGGTGTAGAAATGTGATGCTTCCATATTGTGACTTGTTGATAAAGCTTCTGGTGCAAGAGCTTACATGGACTAAAACTCAAGACCCTGCTTATGGCTTCAACAAACCATACAGGAAATTGAGGTGTTCTGTGTATCACTGCATGGAGCACTGGGTTCAACTGACAAATAGCCTGCCTGAGGAGGGTAGTGTGGGGAACAAATTGATGTCACTCATACTTGATGACATTAGGCCATTAACTTCTCAAACAAAGGTCAACAAAAGATTGATGAAAATGCAAATGAGAGTGTTACATGCAGAGCACTCAAAGGAAGTGCAAGTTGTCATTGTCAAACTGATCATTCAATGTCAGCAGTCTTCATTCAATGGTTTCCCCATACCTTACACAAGTGCATATTGTCGACAGGCATTGTATCATGCTCTACTTAATTGTCTGCTCACTAACTCTCCTTGTGTTCCACCACCTGTGCATCATGCTGCAAGATTGTTTAGTTTAGGACTGCAGGATAGTGATTTTAAGGTATCAAGTTTCTGCCAAGAGGCCTTAGCTGTAGTTAATACCATCATTCACCCACGGATATTCCCACAAGTGTGTTCTGCACTAGGGCCTTTACAGCTTAACACCTCTGAGGAGCATGCAAATACAACAGAAATGGCCTCTTCAATTACATTTGAGCATGTTATGAATACAAACTGGCAAAGTCTGAGCGGGGAATCTGAAAGCAATAATGGAAATCATGCTGATTATTTATGGACAAACCAAATCCCTATGGAGCAAGGGGAATTTGGAGCTAGAGAAGGGGGAAGTATGGACAACAGTTTTGTTATAGATGTCGGGAATCAAACAGTACAAGAGTCTATACAGAATGAAACATCTTTTAATCAATCTGATAAGTCTTTTACTAGTAAGAGTGATAGGGAAAGCCAAGGTAACAGTGGAATAGATAAATCACTTGCTGATGCAGGAAACACAGCCAGCCAGATCTCAACCCAACCTCAGAACAATGAGTCAGGTCAAACTGTCTTATCAGAAACATTGCCTGATGAAGACTTTGGACCTTCTCCACAGTATGCTAGAATATTTGAGCCCAAGAGAAGGAAAACTGATACTGATAATTGCAGTTCAAAGGAGAGAATTTTAATCAACAACAACAGAGATTATTGA

Transcript

rna-pdam_00003473

acaaaatggcggccgAATTGTCCATTTTAGCAAGTTCGTTTCTGGAGACGAAACCCGAGAGTTATACAGCCTTTTTTCTTGAATGCATAGAATCAAAACAGCACCTTAATTTAGAGAAAATTCCGGATGGCTGGATAGGAAAAGTCAATAGTGTTTGTCTACTTGGAATAACAGTTGAACAATGTGATACAGAAGCCTTCAGGACAAATTGTTCATCATGGCTAAGAGGTCTTCTCCAGATAATTCAGACATCAAAAAAATCAAGTGTCCTTCAGTATTGCAGCAAGATCcttgataacattttaaaacatgcaGCAGAGTTTTCAGAATTATCAAGAGAGTTGTCTAACTCAGTCCTTCCATCCATCATTTCAACCTTGTTGGCCAACAAATGTTCAGACGAGAGCTCAGTGTTGTTGATGCTATCTTCATGTATTCGCTATTTCCCAGGACCTTCAGGACCCTCCAGGaatcaaattgagaaatttattttaccacCTTTAAATTCATTCTGCAATGAAACAATGAAGGCTGCATGCAATTGCTACGCCTTGTTACCAAGATGTAGTCGCAGTGGGTCAGGTGACAAGCAACAGCTGTGTCCTTGGAATATACAATGGAACAAAGTGCTTTGTACAATTCATAAACTCCTTGATAGCGCCTACGAAAATGTTGAGCCAGTTGCCAACAAACCCTCCCAAGACTCAGAAAATGAATCCCTTCCACTTGGTGATGTTCCAGCCACAGAACCAGACCGAACACACACTCTCGTCATAAGGTTGAATTCATTGCTTCACCTCCTCTCAGGAATGATAAGGGAAGAACATCTAAAAGTTGTGGCAGTTCCTATTGATTCTACAATGAACCTTTTAGCTAGAATAATGAATGTGACCTGCAACTCACTGaaaagTGCTGTTGTTGTGGAATCAGTGTTGTTGAGAGCAAGTTTACCATTAATTCATACAAATGCTGTAGATTTGTTAACCACACTTATCACaagGTGTAGAAATGTGATGCTTCCATATTGTGACTTGTTGATAAAGCTTCTGGTGCAAGAGCTTACATGGACTAAAACTCAAGACCCTGCTTATGGCTTCAACAAACCATACAggaaattgaGGTGTTCTGTGTATCACTGCATGGAGCACTGGGTTCAACTGACAAATAGCCTGCCTGAGGAGGGTAGTGTGGGGAACAAATTGATGTCACTCATACTTGATGACATTAGGCCATTAACTTCTcaaacaaagGTCAACAAAAGATTgatgaaaatgcaaatgagaGTGTTACATGCAGAGCACTCAaaggaagTGCAAGTTGTCATTGTCAAACTGATCATTCAATGTCAGCAGTCTTCATTCAATGGTTTCCCCATACCTTACACAAGTGCATATTGTCGACAGGCATTGTATCATGCTCTACTTAATTGTCTGCTCACTAACTCTCCTTGTGTTCCACCACCTGTGCATCATGCTGCAAGATTGTTTAGTTTAGGACTGCAGGATAGTGATTTTAAGGTATCAAGTTTCTGCCAAGAGGCCTTAGCTGTAGTTAATACCATCATTCACCCACGGATATTCCCACAAGTGTGTTCTGCACTAGGGCCTTTACAGCTTAACACCTCTGAGGAGCATGCAAATACAACAGAAATGGCCTCTTCAATTACATTTGAGCATGTTATGAATACAAACTGGCAAAGTCTGAGCGGGGAATCTGAAAGCAATAATGGAAATCATGCTGATTATTTATGGACAAACCAAATCCCTATGGAGCAAGGGGAATTTGGAGCTAGAGAAGGGGGAAGTATGGACAACAGTTTTGTTATAGATGTCGGGAATCAAACAGTACAAGAGTCTATACAGAATGAAACATCTTTTAATCAATCTGATAAGTCTTTTACTAGTAAGAGTGATAGGGAAAGCCAAGGTAACAGTGGAATAGATAAATCACTTGCTGATGCAGGAAACACAGCCAGCCAGATCTCAACCCAACCTCAGAACAATGAGTCAGGTCAAACTGTCTTATCAGAAACATTGCCTGATGAAGACTTTGGACCTTCTCCACAGTATGCTAGAATATTTGAGCccaagagaaggaaaactgatACTGATAATTGCAGTTCAAAGGAGAGAATTTtaatcaacaacaacagAGATTATTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08167 all species →	RIX1	rRNA processing/ribosome biogenesis	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012583 all species →	Domain	Pre-rRNA-processing protein RIX1, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34105 all species →	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16913	PELP1, MNAR; proline-, glutamic acid- and leucine-rich protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.