Gene detail

Detailed information of RMX60912.1 in Pocillopora damicornis

Genomic Location: SczhEnG_99:368348...383477
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00003469

ATGGCATACGGACTGGACGATATTGATTTGGCTGCGCTGAAGGATCCAGCCGGAATATTCGATCTGGTCGAAGTTGTTGGAAATGGAACGTATGGGCAAGTACATAAGGGTCGTCACAAAAGAACTGGGCAACTTGCAGCCATTAAAATCATGGATGTTACAGAAGATGAAGAGGAAGAAATTAAGCTTGAAATAAATGTTCTTAGAAAGTTTTCTCATCATCGGAACATAGCAACATACTATGGAGCATTTGTGAAGAAGGGTTTACCAGGACAGGAGGACCAGCTGTGGCTTGTAATGGAGTTTTGTGGTGCAGGATCCATAACGGACCTGGTTAAAGCTTCAAGAGGAAAATCTTTGAAGGAAGAATGGATTTCATATATATGTCATGAAGTGTTGAATGGAGTTAGTCACCTTCATCAAAACCATGTTATTCACAGAGACATAAAAGGACAGAATGTGTTACTAACAGACAGTGCTGAGGTGAAGTTAGTTGATTTTGGAGTTAGTGCTCAATTGGACAGAACCATTGGAAGACGAAATACCTTCATTGGAACTCCTTACTGGATGGCTCCAGAAGTTATTGCTTGTGATGAGCAGCCAGATGCCACATATGACAACAGGTGTGATATGTGGTCAATAGGAATCACCGCAATTGAAATGGCTGAAACCCAACCACCTTTATGTGACATGCATCCAATGAGAGCTTTATTTCTGATTCCACGGAGTGATCCTCCTCGACTGAAGTCAAAGAAGGCATGGTCCAAGAAATTCCATAATTTTGTCAACACATGCTTGATTAAAGATTACCAGCATAGACCAACAGCAGACCAGCTTTTACAGCATGAATTTATCCGTGATGCAAGATCTCATGAAAGGAAGATAAGAATTGAATTGAAGGATTTCATTGACAGGATGAAAAAGAAGAGAGCACCACCTGATCATGAAGAAGAGTATCAGTATTCAGGAAGTGAGGAGGAAGATGAGCAGTTGTTAGCAGGAATGATTGCTGAGGAAATGGGTATTGTAAATGTTCAGTCAACTTTGAGAAGAAATTTAACCCTCATGCAAGGAGGAACTTTTGGAAGAGGTAATAATTATCCACCAAGAAGGACAAGCAGTGGCAGCAGCCCAGAAATGAACCTGAACCATGGCGCACCTCAGCACATGGGTGCAACTGGTGGTTATGACAATGATGTGTTCCTGGACACCAGTGTTGACAGCTTCATGACTTTTCAAACAGATGACACCCTTACAGCATCCAGCCATTCACGACACCGAGTATCTTTGGATGAGCAGCAAGATGGTGAATCCACACTTAGACCTCAAAGAGAAGCTCACCAAGAGGATTTGGATGGATATGATACAATGGTGGTAAAAGATGATGATGATGACTCGCAGTCAAGTGCCTCAACTGCCAGTATCGGTGAGGCAAGCAACCCCACCCGACCCCTGACGAACAATCTGCCAGACGTGCTACCAACACAACAGCAAGTAAAGAAGTCTCAGACTGAGCGCCATAAGTCATCAGATGAATCCATTGCCTCCTCCATTGTGCCTCAGGACCCTAGGAGAGACAGGAAATTCTCCAAACAACGAAGTTTTGGCTTCAGTCGTCAGTCCCAGGCTCCCTCTGAGGTGTCGGTGAACTTGACCCCTGACAGAACTTCAATCGCTAACTTGGACGATCTGGGAATGCCGCAGATAAGAAAGTACAAGTACAAATTCCGAACAGAAATCTTATGTGGAGCTCTATGGGGAGTCAACCTTCTTGTTGGAACAGAAAGTGGATTATTTTTACTGGATCGGAGTGGTTATGGCAAAGTTTTTCAATTGATATCTAGACGCAGATTCCAACAGATAGATGTACTTGAGGGGATAAACGTTCTTATTTCCATCAGTGGAAAACAAAACAAACTCCGTGTGTATTATCTGTCATGGCTGAAAGCGAAGATTCTAAAGGGAGAAGAGGCGGAGAATATCCGAAGGCAGCGAGGTTACACAACAGTCGGTGATCTGGAGGGATGTGTTCACTACAAAGTTGTGAATTTCCACCGAATCAAATTTCTTGCCATCGCCACTGAGAACATGATTGAAGTTTACGCTTGGGCTCCAAAACCATATCACAAGTTTATGGCCTTTAAGTCTTTCTCGTACTTACCCCAGAAACCTCTGATGTTGAATGTATCAATAGAGGCGGAAAACAGCAGACTAAAAGTCTGTTACTCCTCTGAAATAGGTTTTCATGCTGTTGACTTGGACTCAGCTTCAGTTAATGATTTATTTATTCCTACTCAGCTTCAAGAAAAGTTCCAGCCGCATGCTATTATTCCTCTACCAAGTTCGAGTGGTTTGGAACTTCTTCTCTGTTTTAACAATGAAGGCGTTTACGTTAATACCAACGGAGAACTGGTGAGGCATGCCGTGTTACAATGGGGCGAGACTCCATACGCTATCGCTCACATAGGCTCAGGACAAATAATGGGATGGGGAGAAAAAGCCATCGAGGTTAGATCTGTGGAGACGGGACTTTTGGATGGTGTGTTTATGCACAAAAGAGCTCAGACGTTTAGATTTCTCTGTGAGAGAAACGAAAAGGTTTTCTTCGCTTCTCGGTCGAGTTCAAGTGGCCAGATTTACTTCATGACGCTAAGCAAGACATTTAAAAACTTTGGTTACTAA

Transcript

rna-pdam_00003469

TATTTCCCATGAACAGAGCCCTATGGTTCCCCTGCGCTTGTGTATATTTTGGATGAGCTGCGAGggttgatttgttttttgaaaacactCCAATGTAAACGTATGCGTATTGTGGAAATAGGAGAGTTTGTGTGGGCTGAGGTGTAGCGCAACACTCGTGATCGTTCTACGGATGTGACAAGCTTCCCGTGCGTGGCTTCGCGACTAGGTAGAGATTCAAATTCTTCAGTGAGCAGTGCGGTCGTGAATTCATCACTTTAGACTATCAACATGGCATACGGACTGGACGATATTGATTTGGCTGCGCTGAAGGATCCAGCCGGAATATTCGATCTGGTCGAAGTTGTTGGAAATGGAACGTATGGGCAAGTACATAAGGGTCGTCACAAAAGAACTGGGCAACTTGCAGCCATTAAAATCATGGATGTTACAGAAgatgaagaggaagaaattaagcttgaaataaatgttcttaGAAAGTTTTCTCATCATCGGAACATAGCAACATACTATGGAGCATTTGTGAAGAAGGGTTTACCAGGACAGGAGGACCAGCTGTGGCTTGTAATGGAGTTTTGTGGTGCAGGATCCATAACGGACCTGGTTAAAGCTTCAAGAGGAAAATCTTTGAAGGAAGAATGGATTTCATATATATGTCATGAAGTGTTGAATGGAGTTAGTCACCTTCATCAAAACCATGTTATTCACAGAGACATAAAAGGACAGAATGTGTTACTAACAGACAGTGCTGAGGTGAAGTTAGtTGATTTTGGAGTTAGTGCTCAATTGGACAGAACCATTGGAAGACGAAATACCTTCATTGGAACTCCTTACTGGATGGCTCCAGAAGTTATTGCTTGTGATGAGCAGCCAGATGCCACATATGACAACAGGTGTGATATGTGGTCAATAGGAATCACCGCAATTGAAATGGCTGAAACCCAACCACCTTTATGTGACATGCATCCAATGAGAGCTTTATTTCTGATTCCACGGAGTGATCCTCCTCGACTGAAGTCAAAGAAGGCATGGTCCAAGAAATTCCATAATTTTGTCAACACATGCTTGATTAAAGATTACCAGCATAGACCAACAGCAGACCAGCTTTTACAGCATGAATTTATCCGTGATGCAAGATCTCATGAAAGGAAGATAAGAATTGAATTGAAGGATTTCATTGACaggatgaaaaagaagagagCACCACCTGATCATGAAGAAGAGTATCAGTATTCAGGAAGTGAGGAGGAAGATGAGCAGTTGTTAGCAGGAATGATTGCTGAGGAAATGGGTATTGTAAATGTTCAGTCAACTTTGAGAAGAAATTTAACCCTCATGCAAGGAGGAACTTTTGGAAGAGGTAATAATTATCCACCAAGAAGGACAAGCAGTGGCAGCAGCCCAGAAATGAACCTGAACCATGGCGCACCTCAGCACATGGGTGCAACTGGTGGTTATGACAATGATGTGTTCCTGGACACCAGTGTTGACAGCTTCATGACTTTTCAAACAGATGACACCCTTACAGCATCCAGCCATTCACGACACCGAGTATCTTTGGATGAGCAGCAAGATGGTGAATCCACACTTAGACCTCAAAGAGAAGCTCACCAAGAGGATTTGGATGGATATGATACAATGGTGgtaaaagatgatgatgatgactcGcaGTCAAGTGCCTCAACTGCCAGTATCGGTGAGGCAAGCAACCCCACCCGACCCCTGACGAACAATCTGCCAGACGTGCTACCAACACAACAGCAAGTAAAGAAGTCTCAGACTGAGCGCCATAAGTCATCAGATGAATCCATTGCCTCCTCCATTGTGCCTCAGGACCCTAGGAGAGACAggaaattctccaaacaacGAAGTTTTGGCTTCAGTCGTCAGTCCCAGGCTCCCTCTGAGGTGTCGGTGAACTTGACCCCTGACAGAACTTCAATCGCTAACTTGGACGATCTGGGAATGCCGCAGATAAGAAAGTACAAGTACAAATTCCGAACAGAAATCTTATGTGGAGCTCTATGGGGAGTCAACCTTCTTGTTGGAACAGAAAGTGGATTATTTTTACTGGATCGGAGTGGTTATGGCAAAGtttttcaattgatATCTAGACGCAGATTCCAACAGATAGATGTACTTGAGGGGATAAACGTTCTTATTTCCATCAGtggaaaacaaaacaaactccGTGTGTATTATCTGTCATGGCTGAAAGCGAAGATTCTAAAGGGAGAAGAGGCGGAGAATATCCGAAGGCAGCGAGGTTACACAACAGTCGGTGATCTGGAGGGATGTGTTCACTACAAAGTTGTGAATTTCCACCGAATCAAATTTCTTGCCATCGCCACTGAGAACATGATTGAAGTTTACGCTTGGGCTCCAAAACCATATCACAAGTTTATGGCCTTTAAGtctTTCTCGTACTTACCCCAGAAACCTCTGATGTTGAATGTATCAATAGAGGCGGAAAACAGCAGACTAAAAGTCTGTTACTCCTCTGAAATAGGTTTTCATGCTGTTGACTTGGACTCAGCTTCAgttaatgatttatttattcctaCTCAGCTTCAAGAAAAGTTCCAGCCGCATGCTATTATTCCTCTACCAAGTTCGAGTGGTTTGGAACTTCTTCTCTGTTTTAACAATGAAGGCGTTTACGTTAATACCAACGGAGAACTGGTGAGGCATGCCGTGTTACAATGGGGCGAGACTCCATACGCTATCGCTCACATAGGCTCAGGACAAATAATGGGATGGGGAGAAAAAGCCATCGAGGTTAGATCTGTGGAGACGGGACTTTTGGATGGTGTGTTTATGCACAAAAGAGCTCAGACGTTTAGATTTCTCTGTGAGAGAAACGAAAAGGTTTTCTTCGCTTCTCGGTCGAGTTCAAGTGGCCAGATTTACTTCATGACGCTAAGCAAGacatttaaaaactttggttACTAATATTTACACAAACTGCTCTTTGGGACGGAAATGAAATGACGCCTCATGAAAGAGAGAGCTCACAGGGCTACAGTGGTGGCTACGTTTGTTCGTAATCTACCTGAGGGAACCTGCAGAGATTTCACGTGTTCCTCGGAATaggttttcttctttgggGTTTAAAGCTTAGAAGACCTTCGTCTAGTTTTTTCCCTTATCACACTGACCTGAGAAGTGTGCTTTAGCAGTGAAAAGATTCAGCTCTcgatttttttgcaaagattAACAGTATAATTTATTGGTTACGTTGTAGTAACACATTTTAAGGGGTaagatttaattatttgtaaacaaaagtgaaagccaaaacaaaacaaacaaagcagaaCCGAAATTTAACGTGGAAAAGTATAATTGCAACTTTGAAAGCACAGAATAACTTCTCTCGAGAAGCTCTGTAtaaagtctttttttatccATGTAAATACAGTTTTCGTTAATTAAATTGCGTTAATCTTTTTACATTGAATTCGGTATCTTTAAATCATGTTGTCAAATGTGAATTTTAATGAGTTAGTTTGTAGTCTAAGAGAGTTAGCGCTCAGCctttattcaagaaatttttcgATCTTAACGGCATGCTTTCTGAGAGTAAgccatttattttaaacagtgttgtaggttttttaaaaaatctttttgaatACGTCTTTTAGAGTTTTAGAGGACCAATCGAACTCTGACCCACGAAACTCGTTTTATTTAGTGAACAGAGCCTGCGTTAGTTTATTATCGGTCAGTTGTACAATCGTAAGATTTTCGGAAACTTCGGTTTCCGAACATTGAGCACGAATAGtgtgatttatttattaactttAGAGGCGGGACCTTGTtcgtgaaaaaagaaaattttgtacaGAACGCTTTTAACTTGACCTAATTATTGCAACATGAGTTGAACGAAAAGCTGAAATCGTTACAGTATGACATGCGACCATTTCGCTgtgattttcttgatttagatactaagctttttttttatcagtgtACTAccgaaatttattttgctcgTCTTAATACGGTTTTTATCGACTGACTGAACGGTCCTGCTCCTAATATGCAAACGAGCTATATCTCGTGTCGCTCATCTGTTAAAAAGAACGCTGTAAAACGTAAAGTAAAAAAGATCCAAAGGTCATGAAAAGCTTCCTCGTAACTTCAATACTGATATGTGTGAAATTGTAGCCTCCAAATCTGTGAGGTTCCTGAATGATAAGGCACTAACATTGAGTGACGGTAGCAAATAATGcccaaaataattgttaaattttattattttagatatttttcttagaCTCCAGAGATTGCTGTCGGAGCTAGAATAAAGTGCAAATACAGATTTACcgtgttttttaataaagcgAAATGGTTAGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00780 all species →	CNH	CNH domain	Repeat	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR001180 all species →	Domain	Citron homology (CNH) domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR021160 all species →	Family	Mitogen-activated protein (MAP) kinase kinase kinase kinase	Interproscan
IPR051700 all species →	Family	STE20 Ser/Thr Protein Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47096 all species →	MISSHAPEN LIKE KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0008349 all species →	Molecular Function	MAP kinase kinase kinase kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08840	TNIK; TRAF2 and NCK interacting kinase	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.