Gene detail

Detailed information of RMX60975.1 in Pocillopora damicornis

Genomic Location: SczhEnG_90:7143...14575
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00024081

TGCCATGGGAAAACGTCAGATTTGCGGAGAAAATGCGGCGTCGACGATTCCAAAGAAAATCGTCCAAAATCACCGTCATCCCAGTATATACCTGAGATCGAAAATATTTTGATGACGAACGTATTACAGAGAAAAGATAAGGATGCTTTCAACGTCTTGTTCAACAAAAACTTACAATGCAAGGAGCAGTATCTTGTGCCTATCGCTTGGCATGTTCTCCATGATGCACGTGGGAAAGGAAATGTTTCTGTGACCAAGCTGGAAAATCAAGTGAAAGTTTTAAACAAGGCTTTCTCGGACTCACCATTCCGATTTGCAACGCGTTCAGTTGACAGAACAAATAACGAGGAATGGTTCAATAACTGCAAGGGCCAAAGGTTTTTTATCAGAAGAGGTCTGGGTATTTTGCCTGCATCAACGCTCAACATATACACGTGCCAGTTCAAGGATCCCCTCCTACTTGGCGATGCATCGTTTCCCTGGAGTGACTTAGAGTCTGGCTTATCACACGGCGTGGCAATTCACTACGAGACATTACCCGGAGGAGCGATGCGAACACTAAATCTTGGAGACAATGCTGTTCACGAGGTTGGTCATTATTTTGGTCTCTTTCACGTTTGTGAGGGAGGTTGTTTCGATAGAGACGATGATGAGGTCGCCGACACTCCGCGCTGCGTTGATTATACTTATGTCTGCACAGACCAACCAGTGGATACCTACATGGAGGACGAATGCATGTATGAATTTACTCCGGGGCAGATATCTAAAATGGAAAAAGATGTCAAGAAATACAGACCTACCCTGATGAAAAACATCTATAGACCTTGCAAAATCGATGCTGCATTCCGCTGGTCAAACGGCTATATTTATTTCTTCCTCGGATCAAACTACTACCGTTACAATGAGAATCTTCCTGGTATCGATTCAAGCTACCCTCGACCTATCAGCGACCATTGGAAGGGCGTCCCTTCCTCCATAAACGGCGTTTTTCGTTACGCAAATGGCCTCACGTACTTCTTCAAAGGAAACCAGTACTATCGGTTTAACGACACATCACTGAAGGTGGACGAAGGATATCCCCGACTTATGAGTGACTACTGGGTTGGAGTGCCGAGCGATATAGATGACGTCATTAGTCATTCGAATGGTTTCACCTACTTCTTCAAAGGAGCACAATATTACAGATTTAACCCACGCACCCTCAGAGTGGACCCTGGGTATCCGCGCTCTGTGAGCTCCTACTGGAATGGACTCCCGAGCGACATTGAAGGCGCCTTACAATGGTACAATGGGGGCGTTTTCGCGTTTAAGGATACGCAGCACTGGTTATTCGTGCACGGCGAGCAATCAATAAGTGTTCCTTCCAGTTACCCTGAGTCAATAACTCAGTGGTGGAGCAGTGAACCAGACTTTACTCACTACACAGTGTTCAGACACTTGAATGGCTATACTTTCTTCTTCAAAGGAAACAGCTATTGGCGCTACAATGAACAGTTTAGCCAAGTCGATATCGGATATCCACGCGGCTTGGCAGCCTGGGAAGGAGTGCCAGCGGATGTGGACGCCGCGTTTCTATGGAGCGATGGATACGTGTACTTTTTTAAGGGAAACCTTTTCTTCCGGTATGATAGTGGCCAACGGAAAGTCCAAGATGGATATCCACGAGAAATAAGCTCGTTTTGGAAAGGAATACCCAACAATGTCGACGCCGTTTTCAGATACATAGATGGTCTCACATACTTCTTCAAAGACTCGAATTATTTCCGCTTCAATGACACCTCCCGAGAAGTAGACCCAGGCTTCCCGCGGCTCATAGCCTCGACTTGGAGCGGCGTCCCGGATGACCCCGATACTGTGTTTTCAAACGAAAATGGCTACACATACTTCTTCAAGGAAAACCTCTTTTACCGTTTTAATTCTACAGCGGGACAAGTTGATGCTGGGTTTCCCAAGTCGATAGCATTGTGGAGGGGAATTCTTTATCAGCCT

Transcript

rna-pdam_00024081

TGCCATGGGAAAACGTCAGATTTGCGGAGAAAATGCGGCGTCGACGATTCCAAAGAAAATCGTCCAAAATCACCGTCATCCCAGTATATACCTGAGatcgaaaatattttgatgacGAACGTATTACAGAGAAAAGATAAGGATGCTTTCAACGTCTTGTTCAACAAAAACTTACAATGCAAGGAGCAGTATCTTGTGCCTATCGCTTGGCATGTTCTCCATGATGCACGTGggaaaggaaatgtttctgtGACCAAGCTGGAAAATCAAGTGAAAGTTTTAAACAaggcTTTCTCGGACTCACCATTCCGATTTGCAACGCGTTCAGTTGACAGAACAAATAACGAGGAATGGTTCAATAACTGCAAGGGCCAAAGGTTTTTTATCAGAAGAGGTCTGGGTATTTTGCCTGCATCAACGCTCAACATATACACGTGCCAGTTCAAGGATCCCCTCCTACTTGGCGATGCATCGTTTCCCTGGAGTGACTTAGAGTCTGGCTTATCACACGGCGTGGCAATTCACTACGAGACATTACCCGGAGGAGCGATGCGAACACTAAATCTTGGAGACAATGCTGTTCACGAGGTTGGTCATTATTTTGGTCTCTTTCACGTTTGTGAGGGAGGTTGTTTCGATAGAGACGATGATGAGGTCGCCGACACTCCGCGCTGCGTTGATTATACTTATGTCTGCACAGACCAACCAGTGGATACCTacaTGGAGGACGAATGCATGTATGAATTTACTCCGGGGCAGATatctaaaatggaaaaagatgTCAAGAAATACAGACCTACcctgatgaaaaacatctaTAGACCTTGCAAAATCGATGCTGCATTCCGCTGGTCAAACGgctatatttatttcttcctcGGATCAAACTACTACCGTTACAATGAGAATCTTCCTGGTATCGATTCAAGCTACCCTCGACCTATCAGCGACCATTGGAAGGGCGTCCCTTCCTCCATAAACGGCGTTTTTCGTTACGCAAATGGCCTCACGTACTTCTTCAAAGGAAACCAGTACTATCGGTTTAACGACACATCACTGAAGGTGGACGAAGGATATCCCCGACTTATGAGTGACTACTGGGTTGGAGTGCCGAGCGatatagatgacgtcattaGTCATTCGAATGGTTTCACCTACTTCTTCAAAGGAGCACAATATTACAGATTTAACCCACGCACCCTCAGAGTGGACCCTGGGTATCCGCGCTCTGTGAGCTCCTACTGGAATGGACTCCCGAGCGACATTGAAGGCGCCTTACAATGGTACAATGGGGGCGTTTTCGCGTTTAAGGATACGCAGCACTGGTTATTCGTGCACGGCGAGCAATCAATAAGTGTTCCTTCCAGTTACCCTGAGTCAATAACTCAGTGGTGGAGCAGTGAACCAGACTTTACTCACTACACAGTGTTCAGACACTTGAATGGCTATACTTTCTTCTTCAAAGGAAACAGCTATTGGCGCTACAATGAACAGTTTAGCCAAGTCGATATCGGATATCCACGCGGCTTGGCAGCCTGGGAAGGAGTGCCAGCGGATGTGGACGCCGCGTTTCTATGGAGCGATGGATACGTGTACTTTTTTAAGGGAAACCTTTTCTTCCGGTATGATAGTGGCCAACGGAAAGTCCAAGATGGATATCCACGAGAAATAAGCTCGTTTTGGAAAGGAATACCCAACAATGTCGACGCCGTTTTCAGatACATAGATGGTCTCACATACTTCTTCAAAGACTCGAATTATTTCCGCTTCAATGACACCTCCCGAGAAGTAGACCCAGGCTTCCCGCGGCTCATAGCCTCGACTTGGAGCGGCGTCCCGGATGACCCCGATACTGTGTTTTCAAACGAAAATGGCTACACATACTTCTTCAAGGAAAACCTCTTTTACCGTTTTAATTCTACAGCGGGACAAGTTGATGCTGGGTTTCCCAAGTCGATAGCATTGTGGAGGGGAATTCTTTATCagcct

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05572 all species →	Peptidase_M43	Pregnancy-associated plasma protein-A	Family	Interproscan
PF00045 all species →	Hemopexin	Hemopexin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018487 all species →	Repeat	Hemopexin-like repeats	Interproscan
IPR008754 all species →	Domain	Peptidase M43, pregnancy-associated plasma-A	Interproscan
IPR036375 all species →	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR000585 all species →	Domain	Hemopexin-like domain	Interproscan
IPR018486 all species →	Conserved_site	Hemopexin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201 all species →	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0030574 all species →	Biological Process	collagen catabolic process	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07763	MMP14; matrix metalloproteinase-14 (membrane-inserted)	EC:3.4.24.80	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.