Gene detail

Detailed information of RMX61491.1 in Pocillopora damicornis

Genomic Location: SczhEnG_10:292749...305019
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00003541

ATGGCGGACCGACAAGGTTCTGATTCATCGCAAAAACATACGCCTTTGCACGGGATATCTCTCGCCAACCTTGGTGGGAATTTGAACTTTGGACCTACTCTTGTGCCAGCTTCCGATTCTTCCCCAATTTTATTGAGAAATCAAACAACTGCAACACCGACCACCAGTAGAGCTACACCAGCCCTGGAGCATGTTGGTGAAGAGGACAGTTTTCTTGGACAGCAGCCATCAACACAACAGCAGGCTCCAACACCTTTTCAGTCTGCAGCATCACAAGTAAAGACCCAAACATCACCATTCTTTACTATGGCATCTTCTTCCTCATCTGGTCATGATGACTTCCTATCACCACAAACATCTACTCAAGGTGCAGCTGGTACTTTTTCCAGTCCTCAACTTCCTGTCAGCAAATCTCCATACCAGGCTTCACCAGCCAAGGGACCTGGGTCTCAGACTCCTCCAAAAGCAGTATCTACTCTTCCTCAGTCTTCACCTCCAGTGACAGCCAGTTGGGTCCAGTCTCCATCTCTACCACCAGCCAATAATTTGCCTCAAACTCCCCCTGTTCCTTTTAGCAGTCTACCCCAATCCCAATCATCTACTGCTTGGCCCCAGACTCCACCAACTCCACCAAGTCTGTACCAGTCCTCTTCCTCATCTTCTGTGCCTCACCCCTCACCTCAACTTCCATATCAATATAGCAGCTCTGTGTCTCCTCCTCAAGTACAAGGCGGAATTACCCCTGTTACACCACCTGCAACAGTTGAACCTGTCAAACCTCATTGGTTTTATCAGAAAGGAAATTCTTCTTGGAAACCTTTCTCATACATAGATTCTGAAAACTTAGAGCAGGCATTGAAAACTTCTTCAGCTGGTGGTGACCGGATTGTAGCTACTGATGGTGGTCGATATGATGTGAACCTTGACAAAAGGCTGCGATACCCTCTCTACTGGGAGGAGGACGTGTCTGTTGTAAGAAGGTGCACTTGGTTCCACAAAGGAGATGGAGAGTCCAAACTTGTGCCTTATAAAGAGGATATGGCAGCTAGGCTTGAGGCTGAGTTTCTCCTGGGATTTCGTGAGGCCAAATGGCCATGTAGAGTGGAATTATCAGATGGAGAGCATGTTGTGATGCATAATGCAAATGTTATGGTACATTTTGTACCAAACAATGAGTCCCAGAACTGGAGTGGTGAGGACACTGTAGCCAGGCCTAAAGTGGTCAGACGAGGGGTGGCAGATATTGAGGATGAAATCAATGATGGTGAACCTGCTCAAATTGACCATCTGGTATTTGTTGTCCATGGCATTGGGCCAATTGCTGATCTGAACTTTAGAAATATTATTGAATGTGTTGATGATCTGCGAAAAGTCAGCCTTCAAATGCTCTTTGATCATCATGAGGAGTTGTCCGGAGGTCGTGCCATCGGAAGGGTGGAGTTTCTTCCTGTTCAGTGGCACTCAAAACTTCACAATGACTCTACTGGTGTAGATGAAAGACTTCAGTCCATATCCTTAGGCAGCATACGTCGCTTAAGAGAGTTTACAAACTCAACCCTTGTTGACATTCTTTTTTACACAAGCCCAACATATTGTCAAAACATAGTCAACACAGTGGGTGATGACATCAAGCGATTATTGGAAATCTTCAAGAAAAGGAATCCAATGTTTAATGGGAAATATTCAGTCTGTGGACACAGCTTAGGTTCAAGTATTCTGTTTGATATTCTTCAACATCAGAAAGACAAGCAAAAGCAAATCCCCTTAGCAAAGCAACCTTTGATTGAAGAAGCAAGCGAAATTCTCAGCACAGATGGCCTCGCAGCCAACAGTAACGACCAAGGACAAGATTCAGATGAGGATTCAGAGGATGAGGAAGCTGAGTCGTACCCAGCCCTTAGAGATGCGCTAGCACAGCTTGGTATACCTGAATACGTCGACTTGTTTGAGTCGGAAGAGATGGACATGGAGACATTTTTACTGTGTGGAGAGGAAGACATCAAGGAAATGGGAATACCTATGGGACCTAGAAAGAAATTAATAGGCTACCTGAATAGTCAAAAATCAATTATGGAAAAAAGAAAACTGGAAAGAGAGGAGAATAAAAAAGTAAGAGCAGAAGCGAGAGCGAAAGCGAAATCTGAACGTAAAAAGTTAAAAGAAGTTTCCAAGGAACAGACAAGTTCCGCGGCGGAGAAGGCATCATCCTGTGCTGTGTCTAGACCAGACATAGCAACAAGCAAGTCTCTATCTGTTGCTTCTGTATCCAGTGTGGAAGTTGTTTATCAACAAGGACTCGCGGGAACAGGACAGCCTTTCGTAGAATACCCGCAACTGGATTTAGAATTTTATGCGTTGTTCGCGTTGGGTTCTCCCATAGGAATGTTTTTGACAGTGAGAGGTGTGGATGAAATCGGCCAGGACTTTCAGCTGCCCACATGTCCACGTCTCTTCAACATTTTTCATCCGTTTGATCCTGTGGCATACCGAATCGAACCTTTAGTGAATCCTTCTGTTCGAGCCGACCCTGTTTTGATGCCACACCACAAGGGAAGGAAACGAATGCATCTGGAGTCTCTTCCCGATCACCCAGGACAAGTGGTCGAAGTAGGACGACTAAACGGTGGTCAGCGGATAGATTACGTACTTCAAGAGAAACCAATAGAAAGTCTGAATGAATATCTGTTCGCACTTGGCAGTCACGTTGTCAGAGGATACAGCTCTTTTTATGTTAAAAGAAATCTATAG

Transcript

rna-pdam_00003541

GACGTGTCcattttcaagatggcggaccGACAAGGTTCTGATTCATCGCAAAAACATACGCCTTTGCACGGGATATCTCTCGCCAACCTTGGTGGGAATTTGAACTTTGGACCTACTCTTGTGCCAGCTTCCGATTCTTCCCCAATTTTATTGAGAAATCAAACAACTGCAACACCGACCACCAGTAGAGCTACACCAGCCCTGGAGCATGTTGGTGAAGAGGACAGTTTTCTTGGACAGCAGCCATCAACACAACAGCAGGCTCCAACACCTTTTCAGTCTGCAGCATCACAAGTAAAGACCCAAACATCACCATTCTTTACTATGGCATCTTCTTCCTCATCTGGTCATGATGACTTCCTATCACCACAAACATCTACTCAAGGTGCAGCTGGTACTTTTTCCAGTCCTCAACTTCCTGTCAGCAAATCTCCATACCAGGCTTCACCAGCCAAGGGACCTGGGTCTCAGACTCCTCCAAAAGCAGTATCTACTCTTCCTCAGTCTTCACCTCCAGTGACAGCCAGTTGGGTCCAGTCTCCATCTCTACCACCAGCCAATAATTTGCCTCAAACTCCCCCTGTTCCTTTTAGCAGTCTACCCCAATCCCAATCATCTACTGCTTGGCCCCAGACTCCACCAACTCCACCAAGTCTGTACCAGTCCTCTTCCTCATCTTCTGTGCCTCACCCCTCACCTCAACTTCCATATCAATATAGCAGCTCTGTGTCTCCTCCTCAAGTACAAGGCGGAATTACCCCTGTTACACCACCTGCAACAGTTGAACCTGTCAAACCTCATTGGTTTTATCAGAAAGGAAATTCTTCTTGGAAACCTTTCTCATACATAGATTCTGAAAACTTAGAGCAGGCATTGAAAACTTCTTCAGCTGGTGGTGACCGGATTGTAGCTACTGATGGTGGTCGATATGATGTGAACCTTGACAAAAGGCTGCGATACCCTCTCTACTGGGAGGAGGACGTGTCTGTTGTAAGAAGGTGCACTTGGTTCCACAAAGGAGATGGAGAGTCCAAACTTGTGCCTTATAAAGAGGATATGGCAGCTAGGCTTGAGgctGAGTTTCTCCTGGGATTTCGTGAGGCCAAATGGCCATGTAGAGTGGAATTATCAGATGGAGAGCATGTTGTGATGCATAATGCAAATGTTATGGTACATTTTGTACCAAACAATGAGTCCCAGAACTGGAGTGGTGAGGACACTGTAGCCAGGCCTAAAGTGGTCAGACGAGGGGTGGCAGATATTGAGGATGAAATCAATGATGGTGAACCTGCTCAAATTGACCATCTGGTATTTGTTGTCCATGGCATTGGGCCAATTGCTGATCTGAACTTTAGAAATATTATTGAATGTGTTGATGATCTGCGAAAAGTCAGCCTTCAAATGCTCTTTGATCATCATGAGGAGTTGTCCGGAGGTCGTGCCATCGGAAGGGTGGAGTTTCTTCCTGTTCAGTGGCACTCAAAACTTCACAATGACTCTACTGGTGTAGATGAAAGACTTCAGTCCATATCCTTAGGCAGCATACGTCGCTTAAGAGAGTTTACAAACTCAACCCTTGTTGACATTCTTTTTTACACAAGCCCAACATATTGTCAAAACATAGTCAACACAGTGGGTGATGACATCAAGCGATTATTGGAAATCTTCAAGAAAAGGAATCCAATGTTTAATGGGAAATATTCAGTCTGTGGACACAGCTTAGGTTCAAGTATTCTGTTTGATATTCTTCAACATCAGAAAGACAAGCAAAAGCAAATCCCCTTAGCAAAGCAACCTTTGATTGAAGAAGCAAGcgaaATTCTCAGCACAGATGGCCTCGCAGCCAACAGTAACGACCAAGGACAAGATTCAGATGAGGATTCAGAGGATGAGGAAGCTGAGTCGTACCCAGCCCTTAGAGATGCGCTAGCACAGCTTGGTATACCTGAATACGTCGACTTGTTTGAGTCGGAAGAGATGGACATGGAGACATTTTTACTGTGTGGAGAGGAAGACATCAAGGAAATGGGAATACCTATGGGACctagaaagaaattaataggCTACCTGAATAGTCAAAAATCAATTATGgaaaaaagaaaactggaaagAGAGGAGAATAAAAAAGTAAGAGCAGAAGCGAGAGCGAAAGCGAAATCTGAAcgtaaaaagttaaaagaagtTTCCAAGGAACAGACAAGTTCCGCGGCGGAGAAGGCATCATCCTGTGCTGTGTCTAGACCAGACATAGCAACAAGCAAGTCTCTATCTGTTGCTTCTGTATCCAGTGTGGAAGTTGTTTATCAACAAGGACTCGCGGGAACAGGACAGCCTTTCGTAGAATACCCGCAACTGGATTTAGAATTTTATGCGTTGTTCGCGTTGGGTTCTCCCATAGGAATGTTTTTGACAGTGAGAGGTGTGGATGAAATCGGCCAGGACTTTCAGCTGCCCACATGTCCACGTCTCTTCAACATTTTTCATCCGTTTGATCCTGTGGCATACCGAATCGAACCTTTAGTGAATCCTTCTGTTCGAGCCGACCCTGTTTTGATGCCACACCACAAGGGAAGGAAACGAATGCATCTGGAGTCTCTTCCCGATCACCCAGGACAAGTGGTCGAAGTAGGACGACTAAACGGTGGTCAGCGGATAGATTACGTACTTCAAGAGAAACCAATAGAAAGTCTGAATGAATATCTGTTCGCACTTGGCAGTCACGTTGTCAGAGGATACAGCTCTttttatgttaaaagaaatctatAGAAATTAATAACAAGATGACATTTAGCTGATGGAGACTGAAAGATCTTGTTTTGTCAACCATGCTACTGAACGAGGGATGATATAGGACGTGCTTGGAGATACCAAACACATCACATGTGAAGTTGCTATGATAGCAGATTTCAACAGCTTAGTCAATGCCCATTAAACtctttgaaaagtaatttcaaattttgactttAATCGTCGATGTTTACTTCCGCCAAGATACTTACGGGCGTAAAATGCGTACCTCAACTATAAACATTCATTACTACTGAACTCAAGAATATTCAAGGAACATTTATGGCGGGTGAATTGTCTCAAAGGAAAACGTACGCAAGAACAAAGAAGGATGCCAGTCATCGGTAAAACCCCCCTGGCCGGTTTGTATGTACACTGTAGTGTTTGTCTTTGGTTTCAAGCAAAAGTGGAAGTACTTCGGGGGGGATTTTCACCTGGACAAAAATTTATGAGACataaattaatgtttaatAGAATatgctttcaaattatttttcggAAAATGTCGGTGATCCTGgtcaataaaaattcaggaaaaaaatatagattATTTGAATTTGTAGAATAAGCTGAatcatgcattttgattggttcgtCCCCATTGAAGGGAAGGCGCAAAAATGACACCACTGTCAAcaatcagtgacacactcggctgtACCACGTGTGCCACTTTCTTGTTCTTACCAcgttttgacgtcatctgtgatatGTTACTGAACACAGACCCTCGGCAACATGGGATCTATTTTATAGATAGCCCGTGTTCTCTCCCCTGGCCTCGTTTGTTTTAGTGGAGAGGCTTATGTTCCCTAGCTACTGTGTAAGGATACTTTTTGGtgattaattaataaatgtggatattttttgttctggACCTTCTTCTGCTTAGGTAACACGTAAGCTTCCAAGTTTTtgtgatttcagttttaaaccGCTACTTGtaagagaataaaataattttaca

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF02862 all species →	DDHD	DDHD domain	Family	Interproscan
PF02825 all species →	WWE	WWE domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR004177 all species →	Domain	DDHD domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR037197 all species →	Homologous_superfamily	WWE domain superfamily	Interproscan
IPR004170 all species →	Domain	WWE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23509 all species →	PA-PL1 PHOSPHOLIPASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX61491.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.