Gene detail

Detailed information of RMX61504.1 in Pocillopora damicornis

Genomic Location: SczhEnG_10:124474...140729
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00003528

GCGGTGTACCTGTGCTGTCTATAAATTCACCAAAAACGAAGCGATTTTCGATGTGTTCGATTACCGGAAATTTTCTCATTCATTGGTGGGgaagaaaggcaaaaaaagagaaagtgtGCTTCGTTCAGGAAGAAATTGTGACCCCGATGGCGACCTCCGAGATACTCACAGACTATACCCATTGAAACCgataaatattaattcttCAGATATAGCTTCTGTCATCACTGGCTTAGGTTCTCTCTCTTGCTACGATTCTgctaaaatttgatttcaaaccAGGATCAAACTTTGCTTCAtgtcttttgtaatttttaaattagatCCAACTCTTTTCTGATTGAATTTTTCCTCAGAGATTTGTCATCTTTAGCTTAATCTTACTTATTACTTGCATGAGTTTAGCGATAGTTCAGCCCATACCCAGTCCTTTTCAGTCGTTCCAACATATTTCCCGTCATTCCTTGCGAGATGAAGCACGTATTAACTTTGCTGACTCAGTGTTGAGTCAGTGAAGTTGATatgagagaagaaaaacttcaataaaactaaaataattctcGAATGCACTCCTTTCTCTTGACCAAACATGACAGAGAGTCAGGAATGTGATGACCAGATGTTAATCGAGGACGACGGGCTTCGCTGTGTTGTCAAAATGGAACCTGAAACAAGGGAGATTTCAAAGAGAATCATCTTGTTAATAGCGTGCTTGAGTGCTCTGTGTGACTGCCTCCTGTTGTCTGTAATCGTACCAATTATACCAGTATATTTGGATGTAACTGAAATACCAACAACTAGACCACAGATTGCTGCCAACTCAACAAgcaacaaaacatttgcaacTGTTTCCCCATCAACAGCAATAGATTCATCCATGGATCTTAAAATTGGGGCTCTATTTGCATCCAAAGCCTTTGTTCAGATTATGGTGAATCCAGCAGCAGGGCATCTAACAGAAAGaGTGGGTTACAGCATCCCATTATACAGTGGTTTTTGTGTCTTATTTGTATCAACTCTGGTGTATGGCTTTGCATCAGGATATTGGCTTCTCTTTGTAGCAAGGGCCATTCAGGGGTTAGGATCTTCTTTTGTTCTCATTTCTAgTTTAGCAATGCTTGCAGCTGCCCACCCTGATGATAACGAACGTGGGACAGCAATAGGTATAGCAATGGGAGTGACAGGTCTTGGTGTCCTAGCTGGGCCGCCCTTTGGAGGATTGTTTTACAGTATTGGAGGCAAGGGCCTTCCATTCTTCATACTTgctggtttcatttttttaacatttgTGTTGGTGGTTATTAGTCAGAAGCCAGTTATGCCAAAAGATACAGTAAAACCCACCCTCAAGGACTTGTTGTCAGATCCTTACATTCTGATTGCCAGTGGTGCTGTATGTTTCTGCAACATGTCATTTGCTCTGCTAGAACCAACATTACCAATATGGCTGTTAGAAACTATGGATGCCAAGAAATGGCAGATAGgtCTTATTTTCCTGCCCTCTACTGGAGCATACCTTATAGCAACACCACTCTTAGGAAAACTGGGCAATATCATCGGCAGGTGGCTTGCATCTCTGATTGGACTTGTGTTGGTTGCTGTTAGTTTATTTGTGGTTCCGGTTGCGAAGACCCTGGCTGTTCTTGTAGCCCCGCTGTTTGCCCTGGGCTTTTGTATCGGAATGGTTGATGCCTCCATGGCTGCCACCTTGGCCTACCTTGTGGACATCAGACACGCCTCTGTATATGGCGCTGTATTTGCTATTGAAGATTTTGCGGCCTCAGTCGGTTTCGCCTTTGgACCACTTCTTGGAGGAGTAATTGTATCTGAAGGAAGTTTTCAATGGCTTCTGCGTGGATTAGCGATTCtgaatcttttctttgctcCACTCCTTGTGTTTTTGAGAAACCCACCAGCCAAACATCAATTATTGCAGAATGAGGACACAGAAGGTAGAATTGACAGACATGTTACAATTGTGGTATTGATGAACAAATGGAGCCAGCAGAAATACGAGAGAGCTGTGAATGAGCGTGTGGAGAGATTTGCCAGAAGAAACCGAGATTGTTCATTCCTACAGAAGATTTGAAGGCCTTATTTACATCGGTGTTCACTTActtgcaggaaaaaaatccgAGAACAAGAACGGGGAAAAGACAGAACTGGCAGCTGGTGCTGTCCCAGCGTTTTAGTCTGGCTCAGATGAAATCTGAGTCGTATTTTTATCAGGAGATTTCTTTCGGTCTGAAGTGGAATTGGATTCGTTCCTTCGCCACGCTTAAGCTggacatttgaaaaatattaagaaatttatttgaatggTGATTTTGAGCAAAGAACACTTAAACTAAACGttcaaaacaattatcttagcttttttaattatttttacttcaaaacgtaaatttattaaacaacaaatttgaataatgAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR050930 all species →	Family	Major Facilitator Superfamily Vesicular Transporter	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23506 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005335 all species →	Molecular Function	serotonin:sodium:chloride symporter activity	Interproscan
GO:0015842 all species →	Biological Process	aminergic neurotransmitter loading into synaptic vesicle	Interproscan
GO:0030672 all species →	Cellular Component	synaptic vesicle membrane	Interproscan
GO:0043195 all species →	Cellular Component	terminal bouton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08155	SLC18A1_2, VMAT; MFS transporter, DHA1 family, solute carrier family 18 (vesicular amine transporter), member 1/2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.