Gene detail

Detailed information of RMX61562.1 in Pocillopora damicornis

Genomic Location: SczhEnG_9:12496...23079
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00013708

CATTAGGCCAAAATGGCGGAATAGTTGGCGTTATCTTAGTAGAACTTTCTATCGAAATAATGGCCCTTCCGCCGGCCAAGGAGGGTGAAAAGGGTTTAACACTTTGCCGTTTATCAGCACCAACCTCTCTTCGATTTGAGCCTGTTGGTCGATGGTATGAAGCAAATATTCGCCGCCGTCAGCATGGCTTGTCTTCGCATCACAGTAGCTCCAGTGCTAGTTCGAGTGCTGGCTCTGAGGTAGATTTTTCTTCAGATGAAGAAGATCATAATTTTCTCCTCACCTTGGATCCTACAGACTGTAAGGATCATTACAAGGTTTTAGGACTTGGCAAACTCAGACATAAGGCTACTGCTGCAGACATTAAGAAGGCATTCAGGAAGATGGTGCTTAAACATCATCCAGACAAGAAGACCAAAAAGGAAGAACCTTCTAAGAAGAACTTTTCTGATGAGGATCTGTTTGCATGCATCACTGCTGCAAATGATGTCCTAAGCAGCAAAGAGAAGCGGCGAGCTTATGATAGCGTGGATCCAATGTTTGATGATACCATCCCTTCAGTAAATGCCAACTcgagaagtaattttttcgAAGTTTTTGGCCCGGTGTTTGAGAGAAATGCTAGaTGGTCCAAAGTTCAACCTGTCCCAccattaggaaatgtaaattcAACATTTGAAGAAGTCGATAATTTTTATAGCTTTTGGTATAATTTTGATTCATGGAGAGAATATTCTTATCTAGATGAAgaggagaaggaaaaagggGAGAATCGTGATGAGAGGCGgtggattgaaaaacaaaacaaagttatgagacaaaagaggaagaaagaagaagttgCTCGAATAAGGACTTTAGTAGATAACACTTACGCTTGCGATtttagaataaagaaattcaaagacgaagaaaaagaaaagaaacttgccGAAAAGAGAGCGAAAGAAGAGGCGGCCCGGGCGGCTGCTGAAGAGAAAGAACGACAAAGACTTGAAGTcctagaaaatgaaaggaaattgagagaaaaagaagagcaaGAAGCAAGAGAAAAGGCGCAGGCAGCCAAAgtagagaaaacaaaaatgaagaatttaatgaagaaggaaagaaaaacgatACGAGCTGTAATAAAGaattatgattattttgttcaagacGAAGAATCGAGAATACGTGAAATGGAAGTTATGGACAGACTACTTGAAGTTATTTCACTGGAAAGCTTACAGTCCTTTAGAGAAGGCATCGAAAAGGCTCAGTCAAAGGACGAAGTAAAAGAAGTTTACGAGAAAGAGATGGAacaaatgagagaaaaaatgagaCAAGAAGCTAATGcggaaacaaaacagagctcaaagaacaaagaaaacgatGAAATGGCCAGCGACGATTGGACAGAGGATCAAACTCAGCTTCTTATTAAAGCCGTCAATCTCTTTCCAGCGGGAACCGCCTCAAGGTGGAAAGTGATCGCAGATTATGTCAACATGCACGCTAAAACTGGAACCCTACGAGATTCCAAACACGTGAtcaaaaaagtgaagaacttACAGAAGCTAGATCACCATCATGGAAAAGCTTCTGCATCGGCGGAGTCTAATCTAACAGTGAGATACGATGCAAGCCAATCTGGTGACGCTGCTCAGCAAACGTCTGCATGGACCTCGGAGGAGCAACGaCTTTTGGAGAATGCTCTGCGTACATACCCCACTAGCACACCAGAAAGATGGGAAAGAATCGCTGAAGCGGTCCCTGGACGAACGAAAAAGGAATGCATGAAAAGATACAAGGACCTGGTTGAGATGGTAAAAGCCAAGAAAGCAGCtcaaagcaaaggaaaagcCGCGTAACACCAACTATTAGAATCAAGCTGCCAAATAATTAGTtcttaattataataattataaAACTGCTGAACTTCTCTTGGCTCCACAGTCATAAAACTGCTTTGACATATGGAAACTGGTCTCTCTTTTCCATTTATATCCTTTTGTAAATAAAGCAATTGATTTTCTCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16717 all species →	RAC_head	Ribosome-associated complex head domain	Domain	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR032003 all species →	Domain	Ribosome-associated complex head domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR044634 all species →	Family	J-protein Zuotin/DnaJC2	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR042569 all species →	Homologous_superfamily	Ribosome-associated complex head domain superfamily	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43999 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006450 all species →	Biological Process	regulation of translational fidelity	Interproscan
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0051083 all species →	Biological Process	'de novo' cotranslational protein folding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09522	DNAJC2; DnaJ homolog subfamily C member 2	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.