Genomic Location: NC_058077.1:1359602...1373043
NR annotation: XP_029190020.2, uncharacterized protein LOC114956902 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029190020.2 |
| Protein |
| XP_029190020.2 |
| UniProt accession | Description |
|---|---|
| P58682 | Toll-like receptor 8 OS=Mus musculus OX=10090 GN=Tlr8 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000118 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13676 all species → | TIR_2 | TIR domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035897 all species → | Homologous_superfamily | Toll/interleukin-1 receptor homology (TIR) domain superfamily | Interproscan |
| IPR000157 all species → | Domain | Toll/interleukin-1 receptor homology (TIR) domain | Interproscan |
| IPR017241 all species → | Family | Toll-like receptor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24365 all species → | TOLL-LIKE RECEPTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0002224 all species → | Biological Process | toll-like receptor signaling pathway | Interproscan |
| GO:0004888 all species → | Molecular Function | transmembrane signaling receptor activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006954 all species → | Biological Process | inflammatory response | Interproscan |
| GO:0006955 all species → | Biological Process | immune response | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0038023 all species → | Molecular Function | signaling receptor activity | Interproscan |
XP_029190020.2.Transcript abundance of XP_029190020.2 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
