Gene detail

Detailed information of XP_029190812.2 in Acropora millepora

Genomic Location: NW_025322765.1:123929...126259
NR annotation: XP_029190812.2, XK-related protein 8-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4VV71	XK-related protein 8 OS=Gasterosteus aculeatus OX=69293 GN=xkr8 PE=2 SV=1
Q49LS6	XK-related protein 9 OS=Tetraodon nigroviridis OX=99883 GN=xkr9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008136 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09815 all species →	XK-related	XK-related protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050895 all species →	Family	XK-related phospholipid scramblase	Interproscan
IPR018629 all species →	Family	XK-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16024 all species →	XK-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_029190812.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_029190812.2 across 54 RNA-seq samples of Acropora millepora. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

54Samples

52TPM > 0

2Conditions

586.9Max TPM

201.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole larvae	30	29	252.60	586.91
branch	24	23	137.01	411.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR1929616	whole larvae	whole larvae	adult	not recorded	SRP056536	586.91
SRR1929628	whole larvae	whole larvae	adult	not recorded	SRP056536	539.41
SRR1929622	whole larvae	whole larvae	adult	not recorded	SRP056536	465.01
SRR1929607	whole larvae	whole larvae	adult	not recorded	SRP056536	408.45
SRR1929611	whole larvae	whole larvae	adult	not recorded	SRP056536	398.97
SRR1929627	whole larvae	whole larvae	adult	not recorded	SRP056536	396.49
SRR1929613	whole larvae	whole larvae	adult	not recorded	SRP056536	348.16
SRR1929624	whole larvae	whole larvae	adult	not recorded	SRP056536	344.77
SRR1929632	whole larvae	whole larvae	adult	not recorded	SRP056536	287.05
SRR1929626	whole larvae	whole larvae	adult	not recorded	SRP056536	268.75
SRR1929621	whole larvae	whole larvae	adult	not recorded	SRP056536	266.43
SRR1929612	whole larvae	whole larvae	adult	not recorded	SRP056536	256.90
SRR1929633	whole larvae	whole larvae	adult	not recorded	SRP056536	254.97
SRR1929625	whole larvae	whole larvae	adult	not recorded	SRP056536	245.72
SRR1929610	whole larvae	whole larvae	adult	not recorded	SRP056536	242.15
SRR1929608	whole larvae	whole larvae	adult	not recorded	SRP056536	241.91
SRR1929605	whole larvae	whole larvae	adult	not recorded	SRP056536	226.96
SRR1929617	whole larvae	whole larvae	adult	not recorded	SRP056536	223.40
SRR1929631	whole larvae	whole larvae	adult	not recorded	SRP056536	200.95
SRR1929634	whole larvae	whole larvae	adult	not recorded	SRP056536	195.02
SRR1929618	whole larvae	whole larvae	adult	not recorded	SRP056536	192.82
SRR1929629	whole larvae	whole larvae	adult	not recorded	SRP056536	187.23
SRR1929615	whole larvae	whole larvae	adult	not recorded	SRP056536	184.33
SRR1929606	whole larvae	whole larvae	adult	not recorded	SRP056536	150.63
SRR1929614	whole larvae	whole larvae	adult	not recorded	SRP056536	114.84
SRR1929623	whole larvae	whole larvae	adult	not recorded	SRP056536	104.47
SRR1929620	whole larvae	whole larvae	adult	not recorded	SRP056536	95.58
SRR1929619	whole larvae	whole larvae	adult	not recorded	SRP056536	88.17
SRR1929609	whole larvae	whole larvae	adult	not recorded	SRP056536	61.56
SRR1929630	whole larvae	whole larvae	adult	not recorded	SRP056536	0.00
SRR1929589	branch	branch	adult	not recorded	SRP056536	411.26
SRR1929604	branch	branch	adult	not recorded	SRP056536	335.28
SRR1929593	branch	branch	adult	not recorded	SRP056536	301.80
SRR1929595	branch	branch	adult	not recorded	SRP056536	218.28
SRR1929602	branch	branch	adult	not recorded	SRP056536	217.22
SRR1929597	branch	branch	adult	not recorded	SRP056536	203.71
SRR1929592	branch	branch	adult	not recorded	SRP056536	188.84
SRR1929598	branch	branch	adult	not recorded	SRP056536	185.71
SRR1929585	branch	branch	adult	not recorded	SRP056536	148.12
SRR1929601	branch	branch	adult	not recorded	SRP056536	134.52
SRR1929587	branch	branch	adult	not recorded	SRP056536	128.43
SRR1929590	branch	branch	adult	not recorded	SRP056536	125.73
SRR1929581	branch	branch	adult	not recorded	SRP056536	94.42
SRR1929596	branch	branch	adult	not recorded	SRP056536	89.84
SRR1929586	branch	branch	adult	not recorded	SRP056536	78.34
SRR1929584	branch	branch	adult	not recorded	SRP056536	75.37
SRR1929582	branch	branch	adult	not recorded	SRP056536	75.32
SRR1929594	branch	branch	adult	not recorded	SRP056536	67.13
SRR1929599	branch	branch	adult	not recorded	SRP056536	46.87
SRR1929588	branch	branch	adult	not recorded	SRP056536	44.35
SRR1929591	branch	branch	adult	not recorded	SRP056536	42.31
SRR1929583	branch	branch	adult	not recorded	SRP056536	40.31
SRR1929600	branch	branch	adult	not recorded	SRP056536	35.02
SRR1929603	branch	branch	adult	not recorded	SRP056536	0.00

Source: CnidoSite RNA-seq expression matrices (AMILL_TPM, StringTie quantification over 54 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.