Genomic Location: NW_025322765.1:252742...255534
NR annotation: XP_029190819.2, serine racemase-like isoform X3 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029190819.2 |
| Protein |
| XP_029190819.2 |
| UniProt accession | Description |
|---|---|
| Q9QZX7 | Serine racemase OS=Mus musculus OX=10090 GN=Srr PE=1 SV=1 |
| Q76EQ0 | Serine racemase OS=Rattus norvegicus OX=10116 GN=Srr PE=1 SV=1 |
| A0JNI4 | Serine racemase OS=Bos taurus OX=9913 GN=SRR PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002523 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00291 all species → | PALP | Pyridoxal-phosphate dependent enzyme | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036052 all species → | Homologous_superfamily | Tryptophan synthase beta chain-like, PALP domain superfamily | Interproscan |
| IPR001926 all species → | Domain | Tryptophan synthase beta chain-like, PALP domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43050 all species → | SERINE / THREONINE RACEMASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
| GO:0003941 all species → | Molecular Function | L-serine ammonia-lyase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0018114 all species → | Molecular Function | threonine racemase activity | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| GO:0030378 all species → | Molecular Function | serine racemase activity | Interproscan |
| GO:0070179 all species → | Biological Process | D-serine biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12235 | SRR; serine racemase | EC:5.1.1.18 | D-Amino acid metabolism | ko00470 | deepkoala |
Transcript abundance of XP_029190819.2 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
