Genomic Location: NW_025322765.1:170401...174342
NR annotation: XP_029190830.2, vascular endothelial growth factor C-like isoform X1 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029190830.2 |
| Protein |
| XP_029190830.2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000521 (this species only) |
XP_029190830.2. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029034 all species → | Homologous_superfamily | Cystine-knot cytokine | Interproscan |
| IPR000072 all species → | Domain | PDGF/VEGF domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11633 all species → | PLATELET-DERIVED GROWTH FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0008284 all species → | Biological Process | positive regulation of cell population proliferation | Interproscan |
| GO:0031954 all species → | Biological Process | positive regulation of protein autophosphorylation | Interproscan |
| GO:0070851 all species → | Molecular Function | growth factor receptor binding | Interproscan |
| GO:0008083 all species → | Molecular Function | growth factor activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05449 | VEGFC_D; vascular endothelial growth factor C/D | - | Cytokines and neuropeptides | ko04052 | deepkoala |
Transcript abundance of XP_029190830.2 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
