Genomic Location: NC_058071.1:5627942...5633189
NR annotation: XP_029190840.2, uracil-DNA glycosylase-like [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029190840.2 |
| Protein |
| XP_029190840.2 |
| UniProt accession | Description |
|---|---|
| A8FJP1 | Uracil-DNA glycosylase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) OX=407148 GN=ung PE=3 SV=1 |
| Q9PJ40 | Uracil-DNA glycosylase OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) OX=192222 GN=ung PE=3 SV=1 |
| Q5HX80 | Uracil-DNA glycosylase OS=Campylobacter jejuni (strain RM1221) OX=195099 GN=ung PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001192 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03167 all species → | UDG | Uracil DNA glycosylase superfamily | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005122 all species → | Domain | Uracil-DNA glycosylase-like | Interproscan |
| IPR002043 all species → | Family | Uracil-DNA glycosylase family 1 | Interproscan |
| IPR036895 all species → | Homologous_superfamily | Uracil-DNA glycosylase-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11264 all species → | URACIL-DNA GLYCOSYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004844 all species → | Molecular Function | uracil DNA N-glycosylase activity | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0006284 all species → | Biological Process | base-excision repair | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0097510 all species → | Biological Process | base-excision repair, AP site formation via deaminated base removal | Interproscan |
XP_029190840.2.Transcript abundance of XP_029190840.2 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
