Genomic Location: NC_058068.1:1229981...1234233
NR annotation: XP_029190871.2, protein phosphatase 1 regulatory subunit 42-like isoform X1 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029190871.2 |
| Protein |
| XP_029190871.2 |
| UniProt accession | Description |
|---|---|
| Q6GQN5 | Protein phosphatase 1 regulatory subunit 42 OS=Danio rerio OX=7955 GN=ppp1r42 PE=2 SV=1 |
| Q5PPX0 | Protein phosphatase 1 regulatory subunit 42 OS=Xenopus laevis OX=8355 GN=ppp1r42 PE=2 SV=1 |
| Q7Z4L9 | Protein phosphatase 1 regulatory subunit 42 OS=Homo sapiens OX=9606 GN=PPP1R42 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007634 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13855 all species → | LRR_8 | Leucine rich repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001611 all species → | Repeat | Leucine-rich repeat | Interproscan |
| IPR050836 all species → | Family | SDS22/Internalin LRR-containing | Interproscan |
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46652 all species → | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17579 | PPP1R42, LRRC67; protein phosphatase 1 regulatory subunit 42 | - | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of XP_029190871.2 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
