Genomic Location: NC_058071.1:5793558...5800339
NR annotation: XP_029190872.2, uncharacterized protein LOC114957553 [Acropora millepora]
Species Acropora millepora · all data for this species · gene families
| CDS |
| XP_029190872.2 |
| Protein |
| XP_029190872.2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000119 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07534 all species → | TLD | TLD | Domain | Interproscan |
| PF12947 all species → | EGF_3 | EGF domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR006571 all species → | Domain | TLDc domain | Interproscan |
| IPR051830 all species → | Family | Neurogenic locus notch homolog | Interproscan |
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR024731 all species → | Domain | EGF domain | Interproscan |
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24033 all species → | EGF-LIKE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
XP_029190872.2.Transcript abundance of XP_029190872.2 across 54 RNA-seq samples of Acropora millepora. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole larvae | 30 | 0 | 0.00 | 0.00 | |
| branch | 24 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AMILL_TPM,
StringTie quantification over 54 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
